Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P08
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 55 6e-08
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 31 0.64
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 31 0.64
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 31 1.1
AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical ... 31 1.1
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 31 1.1
Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF047657-4|AAK18948.3| 330|Caenorhabditis elegans Serpentine re... 29 3.4
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 29 3.4
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 29 3.4
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 29 3.4
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 28 6.0
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 28 7.9
AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical ... 28 7.9
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +3
Query: 570 RARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLXQV 734
R+ + FT V+MICER+L QE+ LR E+E VL+ KL EQ++ +V+F Q+
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEIRLRNEFEMVLTKKLDEQHQQYVQFAAEQL 201
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 421 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 588
A+ K F + DC+ D PTA LL ++ + D K VH LI L +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411
Query: 589 YS 594
+S
Sbjct: 412 HS 413
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 421 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 588
A+ K F + DC+ D PTA LL ++ + D K VH LI L +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411
Query: 589 YS 594
+S
Sbjct: 412 HS 413
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 228 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 401
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 402 VKITPERM 425
P+++
Sbjct: 118 TPTVPDKV 125
>AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical
protein K04F1.14b protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 539 TASSISSWPTTCPHSCTIHF*TGSYDL*AN 628
T+SSI +WPTTC C + T DL N
Sbjct: 38 TSSSIKNWPTTCESVCGNLYLTSETDLSEN 67
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 228 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 401
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 402 VKITPERM 425
P+++
Sbjct: 118 TPTVPDKV 125
>Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical
protein C34B4.2a protein.
Length = 345
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 306 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 413
RC P A+ P+ ++ E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 252 LKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 413
L +L W+ Q+ + R A SPS+S ++ SSF S+S+P T
Sbjct: 19 LDDDLPWQFDDQIIKENDRLDSAAQSPSSSLFSDFDDACTSSFASSLSSPTFAT 72
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 43 TQVQNHLFKFKTSDFTXNLKTNCIFFFVYYLYGA*YYFSFSYIRN*NKFVDIYVNQRISL 222
T VQN L T + T + + FF + FS +IR F+ I +N+RI+
Sbjct: 235 TLVQNGLILVDTLNTTVTYQVFSLLFFQFITLA----FSMVFIRTVEGFIMIAMNERINK 290
Query: 223 GVK 231
G K
Sbjct: 291 GAK 293
>AF047657-4|AAK18948.3| 330|Caenorhabditis elegans Serpentine
receptor, class h protein240 protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 65 LNLKHRTLLVT*KRIVYFFSCITCMGLNIIFHFLIFVIKTNS 190
L L++R + V FSCI C L ++ FL+F+ T S
Sbjct: 174 LTLENRKMFVLTLDFTIPFSCIFCAMLIVVASFLVFIFLTFS 215
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +3
Query: 180 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 341
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 830 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 883
Query: 342 PGLKTSESKPSSFGESVSAPVKI 410
P +T+ S SS +S+ +PVK+
Sbjct: 884 PKKQTASSSASS-TKSLKSPVKL 905
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +3
Query: 180 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 341
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 784 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 837
Query: 342 PGLKTSESKPSSFGESVSAPVKI 410
P +T+ S SS +S+ +PVK+
Sbjct: 838 PKKQTASSSASS-TKSLKSPVKL 859
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 303 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 422
RR SPF++S ST+P +K+ + S F ES+ V +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 222 GRKKKMACATLKR--NLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVS 395
G M ATL NL E K T + S AAS ST+P T+ + S G++
Sbjct: 594 GNFHNMIDATLAAFDNLSVEEKIIKETNGKAASNVAASHSTAPTTTTTSGEASGGGQATI 653
Query: 396 APVKITPE 419
+ K++PE
Sbjct: 654 SK-KMSPE 660
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 369 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 464
PSSFG + VSA K+ PE +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 70 FKTSDFTXNLKTNCIFFFVYYLY 138
FK ++FT K N IF+F+Y L+
Sbjct: 171 FKPANFTQFFKANWIFYFLYALF 193
>Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical
protein T27F2.4 protein.
Length = 165
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 315 PFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYD-----EIKRLHRR 467
PF +S S G T+ S S ES +AP KI R QEI D K+ HRR
Sbjct: 48 PFESSASL--GTSTTSSSRCSSTESSAAPGKIRRGRPQQEIADGQDAHSQKKRHRR 101
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
protein ZK593.5 protein.
Length = 1326
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 291 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 422
P ++ P AS +T+P K S SKP + S P ++TP++
Sbjct: 175 PRRQSLAPPKKASTTTAPVSKPSLSKPRQ-SLAPSKPAEVTPQK 217
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 330 PSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRL 458
P + P L TS KPS + +AP+K P QE+ E ++L
Sbjct: 477 PVSVPELLTSTKKPSQPAKVPAAPIK-APRLSDQELESESQKL 518
>AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical
protein Y46H3D.4 protein.
Length = 517
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 518 WIRRRLFTASSISSWPTTCPHSCTI-HF*TGS 610
W R +S+I+ WP C C I +F GS
Sbjct: 35 WFREAEVNSSTITQWPVNCTEVCGIMNFNAGS 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,967,001
Number of Sequences: 27780
Number of extensions: 360456
Number of successful extensions: 1256
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -