Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P08
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    32   0.34 
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     30   1.8  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   4.2  
At2g46550.1 68415.m05807 expressed protein                             28   5.6  
At1g75140.1 68414.m08728 expressed protein                             28   5.6  
At1g19370.1 68414.m02410 expressed protein                             28   5.6  
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ...    28   7.4  
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ...    28   7.4  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = +3

Query: 258 RNLDWESKAQLPTKRRRC-----------SPFAASPSTSPGLKTSESKPSSFGESVSAPV 404
           RNL  + KA LP   RR             P  ASP TSP  K   S PSS    +S  V
Sbjct: 68  RNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSLVV 127

Query: 405 KITP 416
             TP
Sbjct: 128 STTP 131


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +3

Query: 213 DFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESV 392
           D+  ++K+  C   K    + S        + CS    S ++    +TS S P+     V
Sbjct: 365 DYASKEKRFTCKRCKGPFPFSSLGHRGFLCKSCSEVETSQASLAATRTSTSAPACITSPV 424

Query: 393 SAPVKIT 413
            + +KIT
Sbjct: 425 KSRLKIT 431


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 267 DWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPE 419
           D E +AQ   K+      + +  + P  +   +KP+  G+ + A VK TPE
Sbjct: 618 DEEEEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVKATPE 668


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +3

Query: 228 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPS--TSPGLKT-SESKPSSFGESVSA 398
           K ++A    +R+LD+     LPT ++    +  SP    S GL+  S S  +  G S  +
Sbjct: 188 KDELASLVAQRSLDYVENCDLPTPQKMKRSYYGSPRGFDSDGLRDYSVSGQTIKGTSKGS 247

Query: 399 PVKITPERMAQEIYDEIKRLH--RRGQLR 479
             K  PE  ++    + + L   RR Q R
Sbjct: 248 SCKNRPEASSESDLSKSELLEALRRSQTR 276


>At1g75140.1 68414.m08728 expressed protein
          Length = 617

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 79  SDFTXNLKTNCIFFFVYYLYGA*YYFS 159
           ++F   L ++ +FFF+ +L+GA ++FS
Sbjct: 468 AEFNTMLWSSPVFFFILFLFGAWHFFS 494


>At1g19370.1 68414.m02410 expressed protein
          Length = 605

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 82  DFTXNLKTNCIFFFVYYLYGA*YYFS 159
           DF   L ++ +FFF+ +L+GA ++F+
Sbjct: 470 DFNTMLWSSPVFFFILFLFGAWHFFA 495


>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 237 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 353
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 237 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 353
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,072
Number of Sequences: 28952
Number of extensions: 320348
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)