Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P07
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    31   0.20 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   0.61 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.6  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    25   7.5  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.5  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   9.9  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +1

Query: 52  SNSISATTKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDV 231
           SNS+S++T SAS   + +  S +Y ++S+    +     S  A  T ++    T E+   
Sbjct: 566 SNSLSSSTSSASTSYIPSASS-SYEVASNSSDYYSQTVSSITASGTTSS----TSEIVST 620

Query: 232 KLENGNAPGASNGTSS 279
              N N  G+ NGTSS
Sbjct: 621 PASNSNT-GSLNGTSS 635


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
 Frame = +1

Query: 31   QGKATAGSNSISATTKSASLKRLSATDSLAYMIS--SHKY----IKHL*RKMSTEAQNTD 192
            +GK  +GS +  ++TKS   K      S    IS  SH+     +    R+  T A N +
Sbjct: 813  RGKHASGSRNSISSTKSPQHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTSASN-E 871

Query: 193  AAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 288
            +  ++ TQ     KLEN      S  +SSKS+
Sbjct: 872  SDPKKSTQRDSSKKLENSTVVSGSPSSSSKSD 903


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 460 LKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAA-AAVXRLT 636
           ++S K  + +  K  D+L K K  EL  +KK +    +  +  HV +  AA  +   ++ 
Sbjct: 69  IRSSKQTLINKVKAQDELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIV 128

Query: 637 DTSKY 651
           D  KY
Sbjct: 129 DEKKY 133


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 378 LRERDGFSIGLGISKFGKRLEGFL 307
           L   D F++ + +SK GK   GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 493 QKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVXRLTDTSKYTG 657
           Q + +   +  ++E D I+KK+T+  QP       K  A   +  + TD  K +G
Sbjct: 98  QSYNEPYMQRHRIE-DAIEKKMTSETQPSTDEKGRKVSATENSAPKKTDKEKSSG 151


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 475 LGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPA 609
           L +DDY+KF +DL K +  +      + + C Q  I   +  S A
Sbjct: 340 LNVDDYRKFREDLWKKRHGKRKVY--QCSNCSQTFINEDIQNSSA 382


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 21/92 (22%), Positives = 35/92 (38%)
 Frame = +1

Query: 4   FGRPMSXKQQGKATAGSNSISATTKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQ 183
           F RP        A A S+  SAT  +A+    +    +A   SS+ Y        +++A 
Sbjct: 76  FNRPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSSSSYVYSVPPTNSTTSQAS 135

Query: 184 NTDAAVEQVTQEVKDVKLENGNAPGASNGTSS 279
              +AV   + + +   L       +S   SS
Sbjct: 136 AKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.123    0.331 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,818
Number of Sequences: 5004
Number of extensions: 49842
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)