Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P07
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 34 0.074
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 30 1.2
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin... 30 1.2
At4g22100.1 68417.m03195 glycosyl hydrolase family 1 protein con... 29 2.1
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi... 29 2.8
At2g22795.1 68415.m02704 expressed protein 29 2.8
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,... 29 2.8
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 29 3.7
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 3.7
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.7
At3g11720.1 68416.m01437 expressed protein 29 3.7
At2g39580.1 68415.m04855 expressed protein 29 3.7
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 28 4.9
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 28 4.9
At3g28720.1 68416.m03586 expressed protein 28 6.5
At5g58410.1 68418.m07314 expressed protein contains similarity t... 27 8.5
At3g58260.1 68416.m06495 meprin and TRAF homology domain-contain... 27 8.5
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con... 27 8.5
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 27 8.5
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 34.3 bits (75), Expect = 0.074
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 385 KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKK 555
KW K+ ++ TT H + KLG+DD QKF+D + K + + ++ KK
Sbjct: 41 KWAALEKLPTFARLRTTIIHPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKK 97
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 333 IWRSQVRWKSHHALAKRQMDEASQSH*WKENNNNGH 440
+W RW+SHH +A+ ++A + + +K N + H
Sbjct: 34 LWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIH 69
>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
this genomic sequence region is unfinished, the
annotated gene may be missing a stop codon or start
codon
Length = 487
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 412 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDL 513
DG+K + DT +H +K+ + + D Y K+ +D+
Sbjct: 56 DGRKPSVWDTFLHCRKMDNGDIACDGYHKYKEDV 89
>At4g22100.1 68417.m03195 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to hydroxyisourate hydrolase
(GI:19569603) [Glycine max]; furostanol glycoside
26-O-beta-glucosidase F26G,Costus speciosus,
PATCHX:S78099
Length = 507
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 412 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIK 549
DG+K + DT +H + L + + D Y K+ +D+ + LD +
Sbjct: 49 DGRKPSVWDTFLHTRNLSNGDITSDGYHKYKEDVKLMVETGLDAFR 94
>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 883
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/90 (23%), Positives = 40/90 (44%)
Frame = +1
Query: 16 MSXKQQGKATAGSNSISATTKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDA 195
+ KQ+ SA ++A +K+L + L + + + I + + +TE+
Sbjct: 86 LGRKQEAVLVLEQGYKSALQQTADVKQLLELEEL--LKDARREIDGILKSHATESPQETP 143
Query: 196 AVEQVTQEVKDVKLENGNAPGASNGTSSKS 285
A + K KL+N + +SNG S +S
Sbjct: 144 AYHSEKSDEKSDKLDNHESGASSNGNSHES 173
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 172 TEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKS 285
T+ Q+ ++ + QEVKDV+ + P + NG S++S
Sbjct: 693 TQEQSDSSSDTNLPQEVKDVRTDLETLPDSGNGGSNES 730
>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase SP:P45582 from
[Asparagus officinalis]
Length = 815
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 131 HHTNTLNTYKEKCLLKHRIRMPLWSK 208
H N+L ++ CL K R +P+WSK
Sbjct: 769 HSPNSLAVVQKACLKKSRCSVPVWSK 794
>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 172 TEAQNTDAAVEQVTQEVKDVKL 237
TE N D +E V Q++KD KL
Sbjct: 265 TEESNVDEVIESVKQQIKDAKL 286
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 181 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 288
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 523 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 558
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 181 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 288
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 281 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 316
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 199 VEQVTQE--VKDVKLENGNAPGASNGTSSKSED 291
V ++ +E V D+K EN ++P +S+ +SS SED
Sbjct: 348 VPEIEEEECVDDLKEENKSSPSSSSSSSSSSED 380
>At2g39580.1 68415.m04855 expressed protein
Length = 1567
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 58 SISATTKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK 234
++S +T S + + S A + S+KYI R +S +AQ + VE + +++D+K
Sbjct: 160 ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQRPEQIVESNSNKLQDLK 218
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 381 RQMDEASQSH*WKENNNNGHGHSLQKTQIGKTRHRRLPEVS 503
RQ S H NNNN + + +TQIG+T P+++
Sbjct: 465 RQRRFLSHHHRHNNNNNNNNNNQQNQTQIGETCAAVAPQLN 505
>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|P47823
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Oryctolagus
cuniculus}; contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 139 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKL 237
K IK + TE N D E V Q+VKD KL
Sbjct: 254 KEIKAVLTSQVTEEINVDEVTEMVKQQVKDAKL 286
>At3g28720.1 68416.m03586 expressed protein
Length = 687
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 505 LETSGSRRCRVLPI*VF*SEWPCPLLLFSFHQ 410
+E G+ RVLP+ VF + PLLL +HQ
Sbjct: 424 VEEEGNEFARVLPVYVFDLDINTPLLLDRYHQ 455
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 370 LSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQ-KFLDDLAKNKKVELDEI 546
LS++ W++ ++++DG K+ + ++ F K V + IDD + L + K K + +++
Sbjct: 588 LSKAFPWIRSSELLDGVKLLSVSVSV-FGPRKVVPVLIDDIETSTLLSVEKEKNMSPEKL 646
Query: 547 KK 552
K
Sbjct: 647 IK 648
>At3g58260.1 68416.m06495 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 321
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 460 LKSVKLGIDDYQKFLDDLAKNKKVELDEIK 549
+KSV +D +K LD+L + KK E D+I+
Sbjct: 226 MKSVGFKLDWLEKKLDELFEKKKEEADKIR 255
>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 512
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 412 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIK 549
DG+K + DT H + + + D Y K+ DD+ LD +
Sbjct: 51 DGRKPSLWDTLCHSRDQGNGDIACDGYHKYKDDVKLMVDTNLDAFR 96
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 297 LIFQGSLQGVFQIWRSQVRWK-SHHALAKRQMDEAS 401
L+F GS G ++W+ ++R K + H+L + + + S
Sbjct: 189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQES 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.123 0.331
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,880
Number of Sequences: 28952
Number of extensions: 265118
Number of successful extensions: 642
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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