Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P05
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    26   4.6  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    26   4.6  
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    26   4.6  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    25   8.0  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
 Frame = +1

Query: 190 ICNIRVSHNNTIFTLTEPDGKVRIIR-SCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQG 366
           + +I  S N+T   +T+  GK  I+R + GM+   +  +               K    G
Sbjct: 18  VAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVG 77

Query: 367 YNTVRVRVQGL--------GPGRLSAVKGLQMGGLNIVSITDNTHV 480
              + ++++          GPG  +A++ L   G+ I  I D T +
Sbjct: 78  ITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPI 123


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 88  IIDLDSALKTKQ-NLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVR 258
           + D+++A   K  ++ P L   Y   N I    + + NIR    N I  L  PDG VR
Sbjct: 4   LFDINAAAAVKDYSIKPRLS--YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVR 59


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
 Frame = +1

Query: 190 ICNIRVSHNNTIFTLTEPDGKVRIIR-SCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQG 366
           + +I  S N+T   +T+  GK  I+R + GM+   +  +               K    G
Sbjct: 18  VAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVG 77

Query: 367 YNTVRVRVQGL--------GPGRLSAVKGLQMGGLNIVSITDNTHV 480
              + ++++          GPG  +A++ L   G+ I  I D T +
Sbjct: 78  ITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPI 123


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 58  APDEGVQGEKIIDLDSALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNT 222
           +PDE +  ++ + LD  +     LF  + ++  L     Y+D      R+   NT
Sbjct: 34  SPDEFLVSKRFLGLDGLVNELSRLFEQVNNELMLLVKDNYQDFVHLGSRMKSGNT 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,164
Number of Sequences: 5004
Number of extensions: 36674
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)