Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P05
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13147| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        28   6.3  

>SB_13147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 100 DSALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTI 225
           ++ + +  +L+PT++  ++    IP  + PI N  +SHN T+
Sbjct: 143 NATVPSTMHLYPTMQLSHRQCIHIPQCNCPIDNASISHNATV 184


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 82  EKIIDLDSALKTKQNLFPTLESDYQLYN 165
           +KI + ++ LK +QNL+  + SD  LY+
Sbjct: 248 KKIAEAETKLKQQQNLYEAVRSDRNLYS 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,964
Number of Sequences: 59808
Number of extensions: 279695
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)