Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P05
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase (GA...    31   0.73 
At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ...    28   3.9  
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    28   3.9  
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    27   9.0  

>At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase
           (GA2OX2) identical to GI:4678368 ga2ox2
          Length = 341

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 YKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 288
           YK +P+     SH+  +  L +P+ K RI+++C   GF
Sbjct: 20  YKPVPVLT---SHSIPVVNLADPEAKTRIVKACEEFGF 54


>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
           protein 
          Length = 253

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 163 NGIPYKDLPICNIRVSHNNTI-FTLTEPDGKVRIIRSCG 276
           NG+P +  P+   + S +N +  T+TE DGK   +  CG
Sbjct: 105 NGVPLQTTPVLFPQSSISNGVTHTVTESDGKGSALSLCG 143


>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 91  IDLDSALKTKQNLFPTLESDYQLYNGIPYKD 183
           + + S+L T  +   +LE  Y+L+ GIP+KD
Sbjct: 485 LTVGSSLFTLYSKCGSLEESYKLFQGIPFKD 515


>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 409 RLSAVKGLQMGGLNIVSITDNTHVSWNP 492
           ++  V+ L   GL + +  DN HV WNP
Sbjct: 88  QVDIVQVLHCDGLLLCTTKDNRHVVWNP 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,593,884
Number of Sequences: 28952
Number of extensions: 193648
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)