Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P03
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       29   3.5  

>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 186 IISEQNEASSEMLLLCFYSDRIPDHCY-PRHHTFDSHNH 299
           IIS  N  S+ + + C  S   P H Y   HH   SHNH
Sbjct: 203 IISTINTTSTVITITCNISTTPPQHHYHHHHHNHYSHNH 241


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 554 VIDV*RILISKPIAKTIPSTTHGSINHDRRLFIA 453
           ++DV  ++ S P       TTH S++HD+RL  A
Sbjct: 293 LVDVYCMVSSDPTLSATADTTHTSLSHDKRLSTA 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,909,363
Number of Sequences: 59808
Number of extensions: 340564
Number of successful extensions: 813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)