Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P03
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U67955-1|AAB07585.1|  140|Caenorhabditis elegans Galectin protei...    27   9.5  
AB038500-1|BAB11965.1|  140|Caenorhabditis elegans galectin LEC-...    27   9.5  

>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 273 HHTFDSHNHIDMDCQETHSLIQHIYL*QGIRQEAFRLRHSKDNFNNKFM 419
           H  FD +   D  C ET++ I HI   Q     A    HS  ++   FM
Sbjct: 841 HTNFDQNCSSDNYCTETNAFINHINNSQIFNHVATSESHSDKDYRLPFM 889


>U67955-1|AAB07585.1|  140|Caenorhabditis elegans Galectin protein 9
           protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 381 LRHSKDNFNNKFMFHHLDLHTSDRRYKQASVMVDAAVGSAGYRFGNRLADQYPSH 545
           ++H KD   N     ++ LH + R  KQ  V ++A + +A   +GN ++   P H
Sbjct: 32  VKHKKDFVVNLISGGNIALHVNFRFEKQKIVAINAKIDNA---WGNEISHANPLH 83


>AB038500-1|BAB11965.1|  140|Caenorhabditis elegans galectin LEC-9
           protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 381 LRHSKDNFNNKFMFHHLDLHTSDRRYKQASVMVDAAVGSAGYRFGNRLADQYPSH 545
           ++H KD   N     ++ LH + R  KQ  V ++A + +A   +GN ++   P H
Sbjct: 32  VKHKKDFVVNLISGGNIALHVNFRFEKQKIVAINAKIDNA---WGNEISHANPLH 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,621
Number of Sequences: 27780
Number of extensions: 257571
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)