Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P03
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11) ide...    28   5.0  
At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11) ide...    28   5.0  
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    28   6.7  

>At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 512

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 324 VFLDSPYQYDCGYRKYDAEDSSDQGSGPSRSTAAAFLKTLHFV 196
           + LD+ ++   GY + + ++++D GS P R+  A      H++
Sbjct: 330 LLLDNRFRVPSGYLESEFQETTDSGSNPMRTPEAGASPVGHWI 372


>At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 512

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 324 VFLDSPYQYDCGYRKYDAEDSSDQGSGPSRSTAAAFLKTLHFV 196
           + LD+ ++   GY + + ++++D GS P R+  A      H++
Sbjct: 330 LLLDNRFRVPSGYLESEFQETTDSGSNPMRTPEAGASPVGHWI 372


>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 264 YPRHHTFDSHNHIDMDCQETHSLIQHIYL*QGIRQE-AFRLRHSKDNFNNKFMFHHLDL- 437
           Y  HH  D HN  D D   T +L  HI L     QE A  L  S  + +++   HH D+ 
Sbjct: 104 YDHHHQDDHHNLDDDDHDVTVAL--HIGLPSPSAQEMASLLMMSSSSSSSRTTHHHEDMN 161

Query: 438 HTSD 449
           H  D
Sbjct: 162 HKKD 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,805
Number of Sequences: 28952
Number of extensions: 226762
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)