Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O24
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 77 3e-15
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 31 0.20
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 30 0.27
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.63
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 28 1.4
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.5
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 3.3
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 7.7
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 25 7.7
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 297 ARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKP 476
ARL YQSRKRG+LE DLLLS FAK ++ + YD+L++ P DWDI YW ++
Sbjct: 50 ARLKYQSRKRGILETDLLLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGERE 107
Query: 477 TPKEF-DNEIMNLLKKHAKNEDKIALRQPDL 566
P+++ +++ L K+ +++ LR P+L
Sbjct: 108 APEKWKSSQVFKELSKYCRSQRNHTLRMPEL 138
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 30.7 bits (66), Expect = 0.20
Identities = 31/139 (22%), Positives = 53/139 (38%)
Frame = +3
Query: 150 TRTLNLSYNALKNVQKVAFXSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 329
TR L+ LK+++ + + MD ++ + + LEKRKA LH Q K
Sbjct: 7 TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63
Query: 330 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMN 509
LL + L + Q Y L NS +D+ + P + +
Sbjct: 64 QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLHTNQLYEPVKRSQNFLT 120
Query: 510 LLKKHAKNEDKIALRQPDL 566
+ +H ++ + QP L
Sbjct: 121 SISEHYRDAKLMHQVQPQL 139
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 189 VQKVAFXSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 365
+Q + F + NN+DTT ++ L D+ K+ + H+ + + G ++ L+ + F
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712
Query: 366 K 368
K
Sbjct: 713 K 713
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/76 (23%), Positives = 40/76 (52%)
Frame = +3
Query: 312 QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF 491
+ + ++ +++ F K++ F K+ + + I S +++ +IF W +++ +E
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246
Query: 492 DNEIMNLLKKHAKNED 539
DNE +N KK + ED
Sbjct: 247 DNEQVNDEKKQSSEED 262
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -1
Query: 563 IGLSECNFIFIFSMFFEKIHNFIVK 489
IGLS NF+ FS FFE I +F++K
Sbjct: 288 IGLS--NFVNSFSSFFELISHFLIK 310
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 87 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFXSNTTNNMDTTYMEIP 254
L+ L + ++D N + +K M+H R L +S NA+ ++ F T MD P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/23 (43%), Positives = 20/23 (86%)
Frame = +3
Query: 75 ETILLKRLSLSKIDKNNMNLIKM 143
ET+ +K++ LSK+ K+++++IKM
Sbjct: 33 ETVAVKKVKLSKMLKSDLSVIKM 55
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 90 KRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFXSNTTNNMDTTYME 248
K L+L +I++ M++IK + L+Y+ K V+K Y+E
Sbjct: 460 KGLTLEEINELYMSVIKPWESGNFKLNYSEQKKVEKEKSRKGGARGESVEYVE 512
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 609 RNKFILLTLHFRFNVDRVVGVQFY 538
R+KF+L++L N+ ++G+Q Y
Sbjct: 16 RSKFVLISLILLLNLGLLLGIQIY 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,674
Number of Sequences: 5004
Number of extensions: 57242
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -