Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O24
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34) 133 1e-31
SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13) 29 2.7
SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33) 29 4.6
SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002) 28 6.1
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36) 28 6.1
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 28 8.1
>SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34)
Length = 162
Score = 133 bits (322), Expect = 1e-31
Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Frame = +3
Query: 249 IPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINS 428
IP Y V + + E ++ARL YQSRKRGMLEN LLLSTFA ++L+ F++ YD LIN
Sbjct: 46 IPNYKVREDETTEMKRARLLYQSRKRGMLENGLLLSTFADRHLDEFDDDLLQQYDYLINQ 105
Query: 429 PSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPDL 566
P+NDWD++YWI E KPTP E+++ +M+++K AKNED+ + RQPDL
Sbjct: 106 PTNDWDLYYWITENKPTPDEYNSPVMDMIKDFAKNEDRDVRTRQPDL 152
>SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)
Length = 1054
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 264 VEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMM 407
+ + +PL + A+ +Y+ + + D+L A+ Y+ FN+K M+
Sbjct: 900 INQDEPLARYVAKQYYEEQPIKQYQQDVLSQMTARSYVAQFNQKLFML 947
>SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
Length = 919
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +3
Query: 342 DLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKK 521
DL ++ ++ + G + D + S +N+ DI+ KE++N + LL +
Sbjct: 479 DLAITRMSESLVTGTPVVDHFLSDHAVESTANELDIYV---------KEYNNTLAKLLNR 529
Query: 522 HAKNEDK 542
HA N+ +
Sbjct: 530 HAPNKTR 536
>SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002)
Length = 518
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 172 IMHSKMSRKWLXQVIPPTTWIQPTWRFLF 258
+ ++ R+ V PP T I P WRFLF
Sbjct: 139 VFAQQVPREESLYVFPPFTLIGPLWRFLF 167
>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/100 (24%), Positives = 47/100 (47%)
Frame = +3
Query: 261 DVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSND 440
D + Q+ LE +A + + + G+ LL++T + L + +Q + ++ SP
Sbjct: 720 DPDAQKFLETLRALVRF---RLGLPRPGLLVNTINYRRLKSIDLEQ--LKAEMLQSPLCT 774
Query: 441 WDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIALRQP 560
D E KE++N + LL +HA N+ + + +P
Sbjct: 775 KDSPSTANELDIYVKEYNNTLAKLLNRHAPNKTRTRVTRP 814
>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
Length = 979
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/100 (24%), Positives = 47/100 (47%)
Frame = +3
Query: 261 DVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSND 440
D + Q+ LE +A + + + G+ LL++T + L + +Q + ++ SP
Sbjct: 321 DPDAQKFLETLRALVRF---RLGLPRPGLLVNTINYRRLKSIDLEQ--LKAEMLQSPLCT 375
Query: 441 WDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIALRQP 560
D E KE++N + LL +HA N+ + + +P
Sbjct: 376 KDSPSTANELDIYVKEYNNTLAKLLNRHAPNKTRTRVTRP 415
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 336 ENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLL 515
E DL FAKK +N F + +++ D+L N V ++DN + LL
Sbjct: 401 ELDLCKPQFAKKVVN-FKKLRSVDIDQLSEDLLNSEHFQNQQVNINNLVIKYDNTLKALL 459
Query: 516 KKHAKNEDKIALRQP 560
KHA + K+ +P
Sbjct: 460 DKHAPLKAKLVTIRP 474
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 465 EKKPTPKEFDNEIMNLLKKHAKNEDKIALRQP 560
EK+P P + E+ LL++H ++++A +QP
Sbjct: 5863 EKEPIPDDDYEEVHRLLEEHKVFQEEMAKKQP 5894
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 387 NEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIA 548
+E + YDRL++ DW + KK T + F ++ L KH + K+A
Sbjct: 353 HEVYRVFYDRLVDDKDRDW---LHTLLKKVTKEHFKDDFDGLF-KHLSSSGKVA 402
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,966
Number of Sequences: 59808
Number of extensions: 364690
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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