Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O24
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51040.1 68418.m06327 expressed protein                             46   2e-05
At1g60300.1 68414.m06790 apical meristem formation protein-relat...    29   3.8  
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1...    28   5.0  

>At5g51040.1 68418.m06327 expressed protein
          Length = 188

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
 Frame = +3

Query: 258 YDVEKQQPLEKRKA--RLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSP 431
           +D++      KR+   RL Y+S++RG LE DL+L  + ++ +N  +E        ++N  
Sbjct: 59  FDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLE 118

Query: 432 SNDWDIFYWIVEKKPTPKEFDN---------EIMNLLKKHAKNEDKIALRQP 560
           +   D++ W+ E++  P+   +         ++M  L KHA  E + A  QP
Sbjct: 119 NP--DLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQP 168


>At1g60300.1 68414.m06790 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 322

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 306 HYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW 443
           H+ +    +LEN+LL S     YL+   E+     D ++ S  N+W
Sbjct: 161 HFYTTSESVLENELLPSY--GYYLSNTQEEDEFYLDAIMTSEGNEW 204


>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
           plant glutamate receptor family, PMID:11379626
          Length = 860

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 509 IHNFIVKFFRSWLL-FNYPIEYVPIVAG*VYETIVH 405
           +  F ++ FR+ +  FNY +EY+P + G  Y+ + +
Sbjct: 467 VEGFCIEVFRASISPFNYEVEYIPWLNGSNYDNLAY 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,121
Number of Sequences: 28952
Number of extensions: 267865
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)