Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O21
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.5  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   6.5  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   6.5  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   8.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   8.7  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 353 ESPLPISQPSTGKLIEILNEDPNVHYMD 436
           + P P+SQPS  +L + L E    H  D
Sbjct: 5   DPPAPLSQPSASRLQKYLLESAEKHAYD 32


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 395 LISLCSAVISAADSQGNPVCCGNRPRF--AYGAKASRKFPQSASSLSP 258
           L  +CS  I  ADSQ N +C     +F  A G    R +  + SS  P
Sbjct: 28  LSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDINTSSQMP 75


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 323 DDYRNRPDYPESPLPISQPSTGKLIE 400
           +D RN P+Y + P+ I+Q    KLI+
Sbjct: 392 NDKRNLPEYNDVPVVINQDCYDKLIK 417


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 398 EILNEDPNVHYMDGICE 448
           EI+ +DPN+  M  ICE
Sbjct: 120 EIMKKDPNMSLMQDICE 136


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 323 DDYRNRPDYPESPLPISQPSTGKLIE 400
           D+YR  PDYP   L ++    G LI+
Sbjct: 715 DEYRFFPDYPLEALALTAVLFGSLIQ 740


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 251 LALERTDSSYAVCPILCIEGFLTSHVPL 168
           L + ++D   ++CP+LC    L  + PL
Sbjct: 717 LHVNKSDEIRSICPLLCERANLPKNTPL 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,968
Number of Sequences: 5004
Number of extensions: 53291
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)