Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O21
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1115 - 34225793-34225843,34225998-34226072,34226861-342268...    29   2.2  
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811...    29   3.8  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    28   5.0  
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    27   8.8  
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541...    27   8.8  

>02_05_1115 -
           34225793-34225843,34225998-34226072,34226861-34226898,
           34227017-34227113,34227843-34227967,34228071-34228140
          Length = 151

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 179 AKSENLQYTISDIQ-HRNYLFSQEQETPVKEKKLTAGIFVMPSRHKQTEDDYRNRPDYPE 355
           A S   QY I ++Q H NYLFSQ++   + E+          ++   +ED++ + P++  
Sbjct: 4   ASSMLTQYDIEEVQEHCNYLFSQQEIVSLYERFCQLD---RSAKGFISEDEFLSIPEFSL 60

Query: 356 SPL 364
           +PL
Sbjct: 61  NPL 63


>08_02_1260 -
           25680618-25680677,25680763-25680893,25681085-25681163,
           25681250-25681280,25681358-25681410,25681441-25681511,
           25681610-25681678,25681776-25681889,25683101-25683293
          Length = 266

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 359 PLPISQPSTGKLIEILNEDPNVHYMDGICEGSSRTAHHSD 478
           PLP+   ST  ++ +L   P+VHY+    +GS     H D
Sbjct: 219 PLPLDGDSTS-IVSLLGPKPDVHYIYVCIKGSDDGKSHLD 257


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 299 PSRHKQTEDDYRNRPDYPESPLPISQPSTGKLIEILNEDPN 421
           P +HK  +D    + + PE P P   PST  + +   EDPN
Sbjct: 301 PPKHKPLKD----KAEEPEIPKPTEGPSTPVMPQNEQEDPN 337


>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 302 SRHKQTEDDYRNRPDYPESPLPISQPST 385
           S   + +D Y NRP  P SP P+S+ S+
Sbjct: 255 SSDDEEDDYYMNRPLSPVSPSPVSRESS 282


>08_02_1498 +
           27553449-27553730,27553834-27553946,27554063-27554129,
           27554310-27554402,27554516-27554659,27554860-27554954,
           27555120-27555412,27555514-27555632,27555742-27556094,
           27556177-27556286,27556403-27556512,27556802-27557671
          Length = 882

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 383 CSAVISAADSQGNPVCCGNRPRFAYGAKASRKFPQSASS 267
           CS V+S+    G+  C G     A  AK S++ P+SA++
Sbjct: 842 CSLVVSSEVYGGDVHCPGTTGTLAVQAKCSKRPPRSAAT 880


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,249
Number of Sequences: 37544
Number of extensions: 325953
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)