Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O21
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_6269| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.9)               25   1.1  
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         28   6.8  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_4977| Best HMM Match : NHL (HMM E-Value=8.8e-16)                    27   9.0  

>SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 311 KQTEDDYRNRPDYPESPL-PISQPSTGKLIEILNEDPNVHYMDGICEGSSRTAHHSDV** 487
           KQ  DDY    D    P+ P+       +I ++N  PNVH  D I   +    H +DV  
Sbjct: 21  KQKSDDYSGDDDDDALPIIPVPNVHQNDVI-VVNTRPNVHQNDVIVVNTRPNVHQNDVIV 79

Query: 488 SN*YNNSHNGT*IVL 532
            N   N H    IV+
Sbjct: 80  VNTRPNVHQNDVIVV 94


>SB_6269| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.9)
          Length = 107

 Score = 25.4 bits (53), Expect(2) = 1.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 305 RHKQTEDDYRNRPDYPESPLPISQPSTGKLIEILNEDPNVHYMD 436
           R ++     R+  D P +PL I  PS    +   N+  N H  D
Sbjct: 38  RRRKRHTRGRSESDEPLNPLRIINPSKKNSLNRRNDPTNTHVAD 81



 Score = 23.8 bits (49), Expect(2) = 1.1
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 107 FICALV--LAALVIVWIAYCMFIRERAK 184
           FI ++V  LAA +++  A C++IR R +
Sbjct: 15  FIASIVGGLAAAILLIAALCLYIRRRKR 42


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 167 IRERAKSENLQYTISDIQHRNYLFSQEQETPVKEKKLTAGIFVMPS 304
           + E++  E   Y IS I  ++YL  Q  + P  EK+   GIF  PS
Sbjct: 77  VMEKSFPEFYDYYISVITEKSYLNGQNMQDPFGEKR---GIFDFPS 119


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 152 LSKR*PVRPIQERI*NHRYK-HSFLFNIFYNSVC 54
           LS+R P+R + + I  H+Y  H+F  + F+  +C
Sbjct: 64  LSERNPIRRLSKNIVEHKYPLHAFTISSFFYLLC 97


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 109  KTTDINTHFYSIFFITACV 53
            KTT ++THFY++F  + C+
Sbjct: 1234 KTTSLSTHFYALFQASYCL 1252


>SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 73  ILNKNECLYRWFYMRSCIGRTGHRLDSLLH-VHKGTCEVR 189
           IL K EC++R  Y   CI R  ++ + +L  ++K  C  R
Sbjct: 126 ILEKCECIFRLLYKCECIFRLLYKCECILRLLYKCECIFR 165


>SB_4977| Best HMM Match : NHL (HMM E-Value=8.8e-16)
          Length = 182

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 329 YRNRPDYPESPLPISQPSTGKLIEILNEDPN--VHYMD 436
           Y N+PD+P+   P+    T K + ++ +  N  VH++D
Sbjct: 18  YGNKPDFPQFHSPLGIHVTKKDVVVVGDHGNSRVHFLD 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,604
Number of Sequences: 59808
Number of extensions: 416815
Number of successful extensions: 1098
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)