Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O21
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin p... 31 0.64
AF016450-9|AAB65987.3| 295|Caenorhabditis elegans Serpentine re... 29 2.6
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical ... 28 6.0
Z47357-9|CAI46580.1| 563|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47357-8|CAA87425.3| 601|Caenorhabditis elegans Hypothetical pr... 27 7.9
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 27 7.9
>AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin
protein 17 protein.
Length = 438
Score = 31.1 bits (67), Expect = 0.64
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 233 LFSQEQETPVKEKKLTA----GIFVMPSR-HKQTEDDYRNRPDYPESPLPISQPSTGKLI 397
L + +ET +E ++T + V S+ HK ++ P + P+PI+ PSTG
Sbjct: 344 LEKETEETTPEEPEITTVPEEDVVVTKSKVHKTNTEESTESPKHTFKPIPITVPSTGP-- 401
Query: 398 EILNEDPN 421
E+ ++ PN
Sbjct: 402 ELSHQKPN 409
>AF016450-9|AAB65987.3| 295|Caenorhabditis elegans Serpentine
receptor, class t protein69 protein.
Length = 295
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 86 MSVYIGGFICALV--LAALVIVWIAYCMFIRERAKSENLQYTI 208
+ +Y+ F C + LA L+I+++ YC I+ AKS ++ +I
Sbjct: 163 IEIYLS-FPCLAISYLAYLIIIFLIYCKNIKSTAKSRKIEISI 204
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Frame = -3
Query: 349 VIRSVAVIVLGLLMARRH----HEN 287
V+R +A++ +GLLMAR H HEN
Sbjct: 3 VLRKIAIVWMGLLMARSHVILKHEN 27
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 293 VMPSRHKQTEDDYRNRPDYPESPLPISQPSTGKLIEIL 406
V+PS E D+ N P P+P+ +P+T L E++
Sbjct: 1515 VVPSEPSLLELDFTNDPKVIHVPIPLMEPATMYLEEMV 1552
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 293 VMPSRHKQTEDDYRNRPDYPESPLPISQPSTGKLIEIL 406
V+PS E D+ N P P+P+ +P+T L E++
Sbjct: 1515 VVPSEPSLLELDFTNDPKVIHVPIPLMEPATMYLEEMV 1552
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 293 VMPSRHKQTEDDYRNRPDYPESPLPISQPSTGKLIEIL 406
V+PS E D+ N P P+P+ +P+T L E++
Sbjct: 1515 VVPSEPSLLELDFTNDPKVIHVPIPLMEPATMYLEEMV 1552
>AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical
protein T08E11.1 protein.
Length = 649
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 127 QYKSAYKTTDINTHFYSIFFITACVRRV 44
Q+K+A+ TD+N + + F+ A RRV
Sbjct: 577 QFKAAFHETDVNNSIFEVNFLGAPRRRV 604
>Z47357-9|CAI46580.1| 563|Caenorhabditis elegans Hypothetical
protein ZK1128.6b protein.
Length = 563
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 194 LQYTISDIQHRNYLFSQEQETPVKEKKLT-AGIFVMPSRHKQTEDDYRNRP 343
L+ IS H + P+ + L AG++V PS K ++ DY RP
Sbjct: 396 LEVNISPSLHSGTPLDVSVKAPLAKDVLNLAGVYVPPSFDKLSDADYSTRP 446
>Z47357-8|CAA87425.3| 601|Caenorhabditis elegans Hypothetical
protein ZK1128.6a protein.
Length = 601
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 194 LQYTISDIQHRNYLFSQEQETPVKEKKLT-AGIFVMPSRHKQTEDDYRNRP 343
L+ IS H + P+ + L AG++V PS K ++ DY RP
Sbjct: 434 LEVNISPSLHSGTPLDVSVKAPLAKDVLNLAGVYVPPSFDKLSDADYSTRP 484
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 214 VRYCVLKVF*LRTFPYEHAVGYPNDDQCGQYKSAYKTTDINTHFYSIFFITAC 56
+ CV V LR F HA+ Y +D ++S+ D N ++Y+ F + C
Sbjct: 67 IHQCVTAVIRLRAF--YHAIVYASDPCAILFQSSQCFFDGNLYYYTNLFSSFC 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,657
Number of Sequences: 27780
Number of extensions: 305534
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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