Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O21
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.44 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.58 

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 389 KLIEILNEDPNVHYMDGICEGSSRTAHHS 475
           K  E L+ DPN H+      G  R+  HS
Sbjct: 678 KTTEKLSTDPNTHFQVNQSHGIKRSGSHS 706


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 25/117 (21%), Positives = 54/117 (46%)
 Frame = +2

Query: 164 FIRERAKSENLQYTISDIQHRNYLFSQEQETPVKEKKLTAGIFVMPSRHKQTEDDYRNRP 343
           + RER+ S +      +   R      E+E  ++E+  T+      SR ++ ++ Y+N  
Sbjct: 231 YSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEER--TSRKRYSRSRERE-QNSYKNER 287

Query: 344 DYPESPLPISQPSTGKLIEILNEDPNVHYMDGICEGSSRTAHHSDV**SN*YNNSHN 514
           +Y +      + S  +     + +P +     I   S++T H+++   +N YNN++N
Sbjct: 288 EYRKYRERSKERSRDRTERERSREPKI-----ISSLSNKTIHNNNNYNNNNYNNNYN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,058
Number of Sequences: 438
Number of extensions: 3976
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)