Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O20
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = -3

Query: 553 IVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 449
           IV+   FC+ ++   + +  ++ ++   +C T++G
Sbjct: 4   IVVIFAFCICVNAMTIEELKIQLHDVQEICKTESG 38


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 433 CKAR*TRYRCYTQLKVHS 486
           CKA    + C  QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 456  SVLHTAQGSFRSSRASKTTSRLSVTQNLHEITI 554
            SVLH+AQ    SS ++ T    ++T  L  + +
Sbjct: 940  SVLHSAQSVVASSASNVTNVTTNLTTILPPVKV 972


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 553 IVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 449
           IV+   FCV +    + +     +   +VC T+TG
Sbjct: 4   IVLIFGFCVCVGALTIEELKTRLHTEQSVCKTETG 38


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 217 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 363
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 217 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 363
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 217 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 363
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 517 LEVVLDALLERNEP*AVCSTDTGSTVLYRL 428
           L V+++ LL       VC   T ++ LYRL
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYRL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,174
Number of Sequences: 438
Number of extensions: 2259
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)