Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O20
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 191 3e-49
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 191 3e-49
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 190 6e-49
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 184 4e-47
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 182 1e-46
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 141 3e-34
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 47 8e-06
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 32 0.33
At3g22380.1 68416.m02825 expressed protein 29 2.3
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 3.0
At3g09270.1 68416.m01101 glutathione S-transferase, putative sim... 27 9.3
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 191 bits (466), Expect = 3e-49
Identities = 87/120 (72%), Positives = 100/120 (83%)
Frame = +2
Query: 134 LYMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 313
L M + L++L GL RKPMAL+KKLR+AK+EAP EKPE V+THLRNMII
Sbjct: 33 LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMII 92
Query: 314 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 493
VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93 VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 191 bits (466), Expect = 3e-49
Identities = 87/120 (72%), Positives = 100/120 (83%)
Frame = +2
Query: 134 LYMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 313
L M + L++L GL RKPMAL+KKLR+AK+EAP EKPE V+THLRNMII
Sbjct: 33 LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMII 92
Query: 314 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 493
VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93 VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 190 bits (463), Expect = 6e-49
Identities = 84/120 (70%), Positives = 100/120 (83%)
Frame = +2
Query: 134 LYMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 313
L MP + L+EL GL RKPMAL+KKLR+AK +AP EKPE+V+THLRNM+I
Sbjct: 33 LDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVI 92
Query: 314 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 493
+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSSRFIPLK
Sbjct: 93 MPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 184 bits (448), Expect = 4e-47
Identities = 84/120 (70%), Positives = 98/120 (81%)
Frame = +2
Query: 134 LYMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 313
L M + L++L GL RKPMAL+KKLR+AK EAP EKP V+THLRNMII
Sbjct: 31 LDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMII 90
Query: 314 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 493
VPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 91 VPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 182 bits (444), Expect = 1e-46
Identities = 81/98 (82%), Positives = 91/98 (92%)
Frame = +2
Query: 200 GLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEI 379
GL RKPMAL+KKLR+AK EAP EKP V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEI
Sbjct: 52 GLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI 111
Query: 380 KPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 493
KPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 112 KPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 141 bits (342), Expect = 3e-34
Identities = 72/126 (57%), Positives = 88/126 (69%), Gaps = 6/126 (4%)
Frame = +2
Query: 134 LYMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNM 307
L M N L +L + GLK++P+ L+KKLRRAKKEA K PE+VKTHLRNM
Sbjct: 35 LKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNM 94
Query: 308 IIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA----THSS 475
IIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I S+
Sbjct: 95 IIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRST 154
Query: 476 RFIPLK 493
RFIPL+
Sbjct: 155 RFIPLR 160
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +2
Query: 299 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 448
R I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 134 LYMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 253
L M E L++ G RKPMAL+KKLR+A K
Sbjct: 30 LDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 232 EAASRQERGSSE*EARDREDSLEKHDHRSRD---GRFNCRHLQRK 357
EAA ++RG S + RDRE ++ R RD R N R +R+
Sbjct: 43 EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 377 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 478
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At3g09270.1 68416.m01101 glutathione S-transferase, putative
similar to glutathione transferase GB:CAA71784 [Glycine
max]
Length = 224
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 230 KKLRRAKKEA---PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGH 400
+K+ A K+A P +E+ + VK + + + +G + + G+T V+I + IG+
Sbjct: 107 EKVMLAVKKACWGPESEREKEVKEAYEGLKCLEKELGDKL-FFGGETIGFVDIAADFIGY 165
Query: 401 YLGEF 415
+LG F
Sbjct: 166 WLGIF 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,453,008
Number of Sequences: 28952
Number of extensions: 190362
Number of successful extensions: 479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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