Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O17
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37830.1 68417.m05352 cytochrome c oxidase-related contains w... 38 0.007
At4g16745.1 68417.m02529 exostosin family protein contains Pfam ... 33 0.14
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote... 29 1.8
At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing pro... 27 7.1
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ... 27 7.1
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 9.4
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 9.4
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 27 9.4
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 27 9.4
>At4g37830.1 68417.m05352 cytochrome c oxidase-related contains weak
similarity to cytochrome c oxidase polypeptide
VIa-liver, mitochondrial precursor (EC 1.9.3.1)
(Swiss-Prot:P10818) [Rattus norvegicus]
Length = 102
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 154 WKRMSFFVAFPAIALGMLNAYLAHQEEHH-ERPPFVPYEYMRIRTKRFPWG-DGQKSLFH 327
W+++++ AL + Y+ + HH E PP Y +M IR K FPWG DG + H
Sbjct: 44 WEKITYLGIASCTALAV---YVLSKGHHHGEDPP--AYPHMHIRNKEFPWGPDGLFEVKH 98
Query: 328 N 330
N
Sbjct: 99 N 99
>At4g16745.1 68417.m02529 exostosin family protein contains Pfam
PF03016: Exostosin family
Length = 542
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 262 YEYMRIRTKRFPWGDGQKSLFHNPHVNAL 348
YE M + K + + DG K +FH PH+N +
Sbjct: 193 YELMELILKVYIYPDGDKPIFHEPHLNGI 221
>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
PIR:T10515
Length = 1249
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = -1
Query: 83 KEIAALRRIEVIFLWELNRY 24
KEI+ALR++EV+FL+E NR+
Sbjct: 426 KEISALRKLEVLFLYE-NRF 444
>At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing
protein similar to SP|Q12149 Exosome complex exonuclease
RRP6 (EC 3.1.13.-) (Ribosomal RNA processing protein 6)
{Saccharomyces cerevisiae}
Length = 880
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 302 PHGKRFVRMRMYS*GTNGGRSWCSSW 225
PHGK+ V + G +G R +C W
Sbjct: 813 PHGKQIVEYLLREHGEDGVRDFCQRW 838
>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 545
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 223 HQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNPHVN 342
+ HH P+ YE +T +G GQ+ N H N
Sbjct: 489 YHHRHHSTIPYTLYEQSSEKTNEIVFGPGQEQDQMNTHQN 528
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -2
Query: 376 FSGHLHNRWEGHSHEGCGKGT--SVHHPMGNA 287
FSG +HNR G+ E G +HHP +
Sbjct: 627 FSGRMHNRMSGNRRERGGSPVVRRLHHPQSES 658
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -2
Query: 376 FSGHLHNRWEGHSHEGCGKGT--SVHHPMGNA 287
FSG +HNR G+ E G +HHP +
Sbjct: 627 FSGRMHNRMSGNRRERGGSPVVRRLHHPQSES 658
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 370 GHLHNRWEGHSHE-GCGKGTSVHH 302
GH H+ GHSH+ G G + HH
Sbjct: 205 GHSHDNGHGHSHDHGHGIAATEHH 228
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 370 GHLHNRWEGHSHE-GCGKGTSVHH 302
GH H+ GHSH+ G G + HH
Sbjct: 244 GHSHDNGHGHSHDHGHGIAATEHH 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,914,442
Number of Sequences: 28952
Number of extensions: 210227
Number of successful extensions: 408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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