Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O16
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 178 2e-45
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 176 8e-45
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 176 8e-45
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 176 8e-45
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 164 4e-41
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 122 3e-28
08_02_0383 - 16539472-16539633,16543044-16543205 44 6e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.012
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.35
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 3.3
11_06_0289 - 21969248-21973516 28 5.8
11_06_0185 + 21018045-21022307 28 5.8
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 178 bits (434), Expect = 2e-45
Identities = 93/151 (61%), Positives = 106/151 (70%), Gaps = 12/151 (7%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL K K K R KN+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLS 352
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H+S
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 353 PCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 445
PCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 PCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 176 bits (429), Expect = 8e-45
Identities = 79/111 (71%), Positives = 92/111 (82%)
Frame = +2
Query: 113 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 292
R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 25 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 84
Query: 293 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 445
++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 85 FVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 176 bits (429), Expect = 8e-45
Identities = 92/153 (60%), Positives = 107/153 (69%), Gaps = 14/153 (9%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 346
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 347 LSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 445
+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 176 bits (429), Expect = 8e-45
Identities = 92/153 (60%), Positives = 107/153 (69%), Gaps = 14/153 (9%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 346
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 347 LSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 445
+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 164 bits (399), Expect = 4e-41
Identities = 92/168 (54%), Positives = 107/168 (63%), Gaps = 29/168 (17%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 310
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 311 ---RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 445
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 122 bits (293), Expect = 3e-28
Identities = 60/100 (60%), Positives = 70/100 (70%), Gaps = 5/100 (5%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 313
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +2
Query: 227 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 406
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 407 PLSKTVRFNVLKV 445
PLSK + V ++
Sbjct: 62 PLSKRKHWVVAEI 74
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 227 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 406
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 407 PLSKTVRF 430
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 416 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 309
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 161 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 307
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 239 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 373
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 239 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 373
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,516
Number of Sequences: 37544
Number of extensions: 260389
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -