Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O16
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 195 1e-50
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 190 5e-49
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 186 9e-48
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.003
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.010
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.39
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.68
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 4.8
At4g26980.1 68417.m03882 expressed protein 27 6.4
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 6.4
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 195 bits (476), Expect = 1e-50
Identities = 96/144 (66%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 373
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119
Query: 374 IGDIVTIGECRPLSKTVRFNVLKV 445
GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 190 bits (463), Expect = 5e-49
Identities = 92/144 (63%), Positives = 107/144 (74%), Gaps = 5/144 (3%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 373
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 374 IGDIVTIGECRPLSKTVRFNVLKV 445
GD + IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 186 bits (453), Expect = 9e-48
Identities = 92/144 (63%), Positives = 106/144 (73%), Gaps = 5/144 (3%)
Frame = +2
Query: 29 MADQPEXAFXXQATVFLNRKGGMKXK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 193
MA+Q E AF Q VFL+ K K K R KN+GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 194 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 373
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 374 IGDIVTIGECRPLSKTVRFNVLKV 445
GD V IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHVIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 233 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 409
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 410 LSKTVRFNVLKV 445
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +2
Query: 221 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 400
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 401 CRPLSK 418
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 221 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 400
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 401 CRPLSKTVRFNVLKV 445
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.68
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 74 FLNRKGGMKXKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 202
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 184 LVNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLXXKRXLWLIRH 29
+VN+ T ++ S + T+ + P AT P+ GG+ K +W ++H
Sbjct: 268 IVNIVT-GKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLIIWDLQH 318
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 143 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 247
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 218 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 334
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,490,636
Number of Sequences: 28952
Number of extensions: 202259
Number of successful extensions: 403
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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