Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O15
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    31   0.17 
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    29   0.70 
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    27   1.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.7  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 157 ELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGN 306
           E  P   K       E E D  +  VFTDPD  D    +Y   H WL+G+
Sbjct: 201 EADPNSQKALAKQILEQELDMIHQAVFTDPD--DSSVWIY---HRWLMGH 245


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 204 LKSDRRLILHL-CRSQLISLRRYSTARVFKLN 112
           LK D RL++H  C S  ISL+R     V KL+
Sbjct: 289 LKVDTRLVVHAYCHSDFISLKRIKELEVEKLS 320


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = -3

Query: 309 NVSYEPVVPFTVDQLRAXXXXXXREHERIKSISLGLKSDRRLILH-----LC-RSQLISL 148
           N S  P+ P T DQL A           I+  +L L+S++ ++++     LC R+Q ++ 
Sbjct: 184 NASRSPIAPLTEDQLSAREELPLSHFSHIE-WNLHLRSNKSIVVNNFVGQLCSRTQCMTC 242

Query: 147 RRYSTARVFKLNVLSWSDGNDIRHYFASFECL 52
            R ST      ++    D  D+ H  +  ECL
Sbjct: 243 GRTSTTFAPFTSLAIPID--DVSHVVSLQECL 272


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 82   DVIPVAPTKNIELKYPSGAIASQGNELTPTQVK 180
            D+I    TK +E+ +P GA       LTP  VK
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVK 1026


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 46  VAQAFEASKIVPDV-IPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAF 222
           VAQ   +  + PD  + VA  +N EL++      S GNELT       P  T +   + +
Sbjct: 332 VAQHITSLAVHPDGNLFVAGLENGELRFFE---TSSGNELTKFGPHSSPVKTLQFGENGY 388

Query: 223 YTLVFTDPDN 252
           + +V T+ D+
Sbjct: 389 WLVVTTNDDS 398


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 343 SGYIGSGPPQGYWDPSLRL 399
           +G +G GP  G+W PS R+
Sbjct: 641 TGPVGKGPGCGFWAPSWRV 659


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 49  AQAFEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPS 192
           A+  + S +VP     A  K      P+ A+   G    PT  K QP+
Sbjct: 421 AETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPA 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,146
Number of Sequences: 5004
Number of extensions: 47379
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)