Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O15
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)                   36   0.019
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)                   36   0.034
SB_24014| Best HMM Match : Metallophos (HMM E-Value=8.5)               31   0.55 
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_48053| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_28632| Best HMM Match : MTS (HMM E-Value=0.0038)                    28   6.8  
SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)                28   6.8  
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            27   9.0  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                27   9.0  
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)                     27   9.0  

>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
          Length = 314

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +2

Query: 359 PDHPRXTGIHRYVYILYKQPGKLDFDEKRLTNTSIDSRASFSTKKFAEKYNLGAPVAGNF 538
           P  P+ TG HRY + L +Q  +L       T  S+  R+  ++   ++  +   PV   F
Sbjct: 164 PIPPQGTGFHRYTFCLLRQEQQLK-PYTLPTFRSLTDRSISTSALISKVQDRLTPVGLGF 222

Query: 539 YRAQFDDYVPQLYKSL 586
           ++A +DD V Q ++ +
Sbjct: 223 FQASWDDSVTQTFRDI 238



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 28/93 (30%), Positives = 42/93 (45%)
 Frame = +1

Query: 97  APTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVY 276
           +P  N++++Y SGA    GN LTP+Q     +  F    D+ + L  ++   +    LV 
Sbjct: 92  SPCVNLDIRYESGAKVHHGNFLTPSQ---HSACGF--GVDSLWILHDSESTQFVHASLV- 145

Query: 277 REWHHWLVGNIPGGDLSAGETLSGYIGSGPPQG 375
                    NI G  +S G  L  Y+   PPQG
Sbjct: 146 ---------NIQGSRVSNGTVLCEYLPPIPPQG 169


>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
          Length = 115

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 359 PDHPRXTGIHRYVYILYKQPGKLDFDEKRLTNTSIDSRASFSTKKFAEKYNL 514
           P  P  +G+HRY Y   +Q GK       +  + I  R SF  ++FA K+NL
Sbjct: 58  PSPPSGSGLHRYKYYALEQTGK-------VRPSPISERRSFDAQEFAAKHNL 102


>SB_24014| Best HMM Match : Metallophos (HMM E-Value=8.5)
          Length = 252

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 443 FSRRSPIFLVVYKGCRRNDGSQXPW---GGPEPMYPDRVSPAE 324
           F+R SP +  + +  R  D    PW   GG  PMY   +SPA+
Sbjct: 100 FTRGSPQYEWLERDLRGVDRKTTPWVILGGHRPMYTSEISPAD 142


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 338 LYRDTSAPDHPRXTGIHRYVYILYKQPGKLD-FDEKRLTNTSIDSRASFSTKKFAEKYNL 514
           +YR T    +PR + + + VY  Y         D+KRL  + +DS  +FS ++ A+ + L
Sbjct: 268 IYRATPIRVNPRQSNV-KAVYKTYVDVIHFKKTDKKRLYESDVDSAVTFSQERIAQLHQL 326

Query: 515 GAPVAGNFYRAQFDDYVPQLYKS 583
                 + Y     +  P +Y++
Sbjct: 327 AK--QPDIYERLARNLAPSIYEN 347


>SB_48053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 338 LYRDTSAPDHPRXTGIHRYVYILYKQPGKLD-FDEKRLTNTSIDSRASFSTKKFAEKYNL 514
           +YR T    +PR + + + VY  Y         D+KRL  + +DS  +FS ++ A+ + L
Sbjct: 23  IYRATPIRVNPRQSNV-KAVYKTYVDVIHFKKTDKKRLYESDVDSAVTFSQERIAQLHQL 81


>SB_28632| Best HMM Match : MTS (HMM E-Value=0.0038)
          Length = 300

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 391 TMDPSXPGVVRSRCIPIESLQQKGHHQECFLRASGAIH 278
           ++DPS  G ++ RCI +E L Q+    +C + +    H
Sbjct: 157 SLDPSLAGKLQYRCITVEQLAQEKKVFDCVVSSEVIEH 194


>SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)
          Length = 366

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
 Frame = +1

Query: 241 DPDNYDGPELVYR---EWHHWLVGNIPGGDL-----SAGETLSGYIGSGPPQGYWDPSLR 396
           DPDNY+  ++V+R    +HH ++     G L      A +T S    +G   G W   LR
Sbjct: 248 DPDNYNPDQVVWRVELRYHHSIIQQFASGSLDVRTGQAIDTRSFEAFAGHLDGLWRYGLR 307


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 301 GNIPGGDLSAGETLSGYIGSGPPQGYWDPSLRLHP 405
           GN+      +G T S Y  SG PQ  + PS   HP
Sbjct: 574 GNLQSRYYPSGNTQSRYYPSGNPQSRYYPSGNPHP 608


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 217 AFYTLVFTDPDNYD--GPELVYREWHHWLVGNIPGGDLSAGETLSGYIGS 360
           A   L++TDP  Y   G +L     + W    +PG  +  G TL+GY G+
Sbjct: 154 AIGALIYTDPKKYAPYGTDLADTFPNTWW---LPGDGVQRGTTLNGYPGA 200


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 372 LGWSGADVSR*SLSSRKVTTRNVSYEPVVPFT 277
           L W+ A+V   S     +T R++ ++PVVPF+
Sbjct: 351 LRWTRANVLSGSHPLAYITARDIDHKPVVPFS 382


>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 217 AFYTLVFTDPDNYD--GPELVYREWHHWLVGNIPGGDLSAGETLSGYIGS 360
           A   L++TDP  Y   G +L     + W    +PG  +  G TL+GY G+
Sbjct: 245 AIGALIYTDPKKYAPYGTDLADTFPNTWW---LPGDGVQRGTTLNGYPGA 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,501,494
Number of Sequences: 59808
Number of extensions: 377721
Number of successful extensions: 1142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)