Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O13
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.9  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   5.0  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    25   8.7  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 192 RNTKARQVCIATSPLNISKFHTGTTDR 112
           +N+K+R V + +SP N+  F   ++D+
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQ 587


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -1

Query: 179 QGKCVLPHHPLIYQNFIQERQIDSYLIEYPCRIELRRKVYSYSLLDFIL 33
           +GK +L HH       I+++ +   ++ Y    +L ++V +Y L D+++
Sbjct: 384 EGKELLNHHDSSNLMDIKQKMLQQKIVSYLEEKKLAKRVKNYRLKDWLI 432


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 134 NFDILRGDVAIHTCLAFVFLC--WSYLDSFVITTPIFKWLDIWKYEIMLAISNKRIV 298
           N  +L     +  CL   F+   WS +D+  I T     L IW  +  LA   + IV
Sbjct: 200 NEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNLAAHKRHIV 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,239
Number of Sequences: 5004
Number of extensions: 55727
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)