Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O13
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1478 - 30420097-30420651                                         30   1.7  
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   5.2  
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766...    28   6.9  
02_04_0073 - 19471254-19472681                                         28   6.9  
01_04_0116 + 16189250-16189411,16189577-16190104                       28   9.1  

>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 397 GHWPSLPLRGFLGLSPPRWPSAG 465
           GH  S P RG+ G+ PPR PS G
Sbjct: 73  GHMRSHPGRGWRGMEPPREPSPG 95


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 373 AHIIYTLAGHWPSLPLRGFLGLSPPRWPSAGWWI 474
           AH+   LAG+W  LPL   L LS P      WW+
Sbjct: 205 AHLDRELAGYWAKLPLLRRLMLSHPEVEWV-WWM 237


>09_06_0071 -
           20675501-20675830,20676120-20676286,20676472-20676619,
           20676768-20677205,20677667-20677741,20678000-20678283,
           20678940-20679159
          Length = 553

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 41  SLIKNKNKLFFEAQFYKGIQSDSY 112
           SL+++  KLF  A  YKG+ SD+Y
Sbjct: 253 SLLQHAQKLFTFADTYKGLASDTY 276


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 373 AHIIYTLAGHWPSLPLRGFLGLSPPRWPSAGWWI 474
           AH+   LAG+W  LPL   L LS P      WW+
Sbjct: 216 AHLDTELAGYWAKLPLLRRLMLSHPEVEWI-WWM 248


>01_04_0116 + 16189250-16189411,16189577-16190104
          Length = 229

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 165 YTLALPLCSCAGATWIALSLLHLFSSGWTSG 257
           + LA  L      T IA SLLHL+SSG  SG
Sbjct: 144 HALATKLGLVPSHTIIAKSLLHLYSSGGLSG 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,398
Number of Sequences: 37544
Number of extensions: 320757
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)