Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O13
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58764| Best HMM Match : Sex_peptide (HMM E-Value=5.7)               31   1.3  
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               28   7.0  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_58764| Best HMM Match : Sex_peptide (HMM E-Value=5.7)
          Length = 418

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 542 NSEGKHCDETCTPKCS*DFLRCVIHQPALGQRGGLRPKNPLNGSEGQCPARVYII 378
           N +G+H D TC  + S  + R     P  G  G +R K   +GS+  C   ++I+
Sbjct: 282 NPDGEHYDATCGKEQSNAYFRIHAPNPTDGYNGLIR-KYLFSGSQDSCDHSLHIV 335


>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 542 NSEGKHCDETCTPKCS*DFLRCVIHQPALGQRGGLRPKNPLNGSEGQCPAR 390
           N +G+H D TC  + S  + R     P  G  G +R K   +GS+  C  R
Sbjct: 161 NPDGEHYDATCGKEQSDAYFRIHAPNPTDGYNGLIR-KYLFSGSQDSCGGR 210


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 191 GTQRQGKCVLPHHPLIYQNFIQERQIDSYLIEYPC 87
           G +   K VL H    Y   ++   ID YL+  PC
Sbjct: 263 GAKAMHKAVLEHQLFYYSPKVRRSVIDHYLLSMPC 297


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -3

Query: 330 RQYTYNPIYLQTIRLLEIANIISYFQMSSHL 238
           +Q T NP+YL+T+ L E+ +   +FQ+ +++
Sbjct: 320 KQQTQNPLYLKTL-LQELLSFGEFFQLDAYI 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,672
Number of Sequences: 59808
Number of extensions: 388860
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)