Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O13
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57380.1 68416.m06387 expressed protein contains Pfam domain,...    29   3.3  
At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ...    28   7.6  

>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 504

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 143 ILRGDVAIHTCLAFVFLCWSYLDSFVITTPIFKWLDIWKYEIMLAISNKRIV 298
           I++GDV  H+  + VFL  S  +   IT  I  +   W+  +M  +    +V
Sbjct: 108 IMKGDVRTHSASSSVFLFTSLKNKTKITKKIKPYTRKWETSVMQTVQELNLV 159


>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
           sodium transporter AtHKT1 [Arabidopsis thaliana]
           gi|7716474|gb|AAF68393
          Length = 506

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 574 FITV*YHLLTLTVKENIVMKPAHLNVLRIFLGV 476
           F+T+   L+++T ++N+   P + NVL I L V
Sbjct: 402 FLTICIFLISITERQNLQRDPINFNVLNITLEV 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,631
Number of Sequences: 28952
Number of extensions: 273363
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)