Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O12
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    28   1.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   3.6  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   4.8  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   8.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.4  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 627 MPKELCDLREHIRSCFDKVSCFLMP 701
           M ++LC+L++ IR CF   SCF +P
Sbjct: 158 MGEDLCELQDAIRICF---SCFTLP 179


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +3

Query: 279  FITTTATGEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISSVQIYNLIGNLQEDDLQW 458
            ++T+ ATGEKV  +    PG F     V+D    F      S  +IYN+  N  ++ ++ 
Sbjct: 1234 YVTSVATGEKVKSM----PGCFYMRPPVKD----FPTLEFGSFEKIYNVGYNYGKEYVEK 1285

Query: 459  LQLFTEYGKLLKNEDGSK 512
            L+   +   +L   D SK
Sbjct: 1286 LKTSHKLDDILSPRDTSK 1303


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 280 NGSEYISIPVCL*NPPFQLNPTKGSVSFPNQSPFSFRFSVG 158
           NG+ + S PV L N    +NP+  +VS P Q     + S+G
Sbjct: 568 NGNTFGSNPVSLPNQQKSVNPSLMTVSSPRQVRKKRKSSIG 608


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 FQRHTGILMYSEPFITTTATGEKVAVLLMDT 332
           F RH GIL  +  FI  +A  +++A  L +T
Sbjct: 574 FSRHFGILQRNSGFILLSAPMDRIAKKLRET 604


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 403 RLFRSIISSGIFKKTIFSGYSYLPSTENYLKTK 501
           R + S ++S   +K +   YS+ P TEN LK K
Sbjct: 411 RSYSSPLASISSRKVVRMKYSFEPETENELKLK 443


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 283 INGSEYISIPVCL*NPPFQLNPTKGSVS 200
           ++ S++ SIP+   NPP  LN +KGS S
Sbjct: 331 LSPSKFKSIPITS-NPPPMLNLSKGSTS 357


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 694 RKHETLSKQERICSRRSHSSFGILSVISSFFFNSSAPPLAP 572
           R H + S      S   HSS    S  S + F+S   P+ P
Sbjct: 23  RSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVP 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,278
Number of Sequences: 5004
Number of extensions: 62471
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)