Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O12
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 46 5e-10
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 56 3e-08
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 52 5e-07
01_07_0151 + 41518082-41518683,41519629-41519644 31 0.94
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 29 2.9
11_06_0250 + 21701741-21701826,21702094-21702246,21703060-217031... 29 3.8
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 46.0 bits (104), Expect(2) = 5e-10
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Frame = +3
Query: 255 GILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISSVQIYNLIGN 434
GI ++ P + G KV+VL +DT G + IFAL+T++SSV IYNL
Sbjct: 90 GIWIWGTP-VEMDIDGSKVSVLYLDTEGFESVGKSNVYDDRIFALATVLSSVLIYNLPET 148
Query: 435 LQEDDLQWLQLFTE-----YGKLLKNEDGSKAFQMLMFLIRDW 548
++E D+ L E YG++ + + ++L + RD+
Sbjct: 149 VREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDF 191
Score = 35.9 bits (79), Expect(2) = 5e-10
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 69 DLPLMVVSVVGAYRGGKSFLLNYFL 143
+ P+ VV V+G YR GKSFLLN L
Sbjct: 59 ETPIAVVGVIGPYRSGKSFLLNQLL 83
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 56.0 bits (129), Expect = 3e-08
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Frame = +3
Query: 69 DLPLMVVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNENGDWLGNETDPLVGFSWKGGFQR 248
+ P+ V+V+G YR GKSFLLN L + G +G+ D +
Sbjct: 62 ETPIAAVAVIGPYRSGKSFLLNQLLSLTCN-------KGFGVGHMRDT-----------K 103
Query: 249 HTGILMYSEPFITTTATGEKVAVLLMDTPGLFD-PNSTVRDSSIIFALSTLISSVQIYNL 425
GI ++ P I G KV+VL +DT G S V D I FAL+T++SS+ IYNL
Sbjct: 104 TKGIWVWGTP-IELDVNGSKVSVLYLDTEGFESIGKSNVYDDRI-FALATVLSSILIYNL 161
Query: 426 IGNLQEDDLQWLQLFTE 476
++E D+ L E
Sbjct: 162 PETIREADISRLSFAVE 178
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 52.0 bits (119), Expect = 5e-07
Identities = 53/164 (32%), Positives = 77/164 (46%)
Frame = +3
Query: 3 ENHNYVLEXNALQRILLREDVKDLPLMVVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNEN 182
E +V++ A+ + L VK P+ VVSV G R GKSF+LN L
Sbjct: 43 EKGKFVMDPEAVAALQL---VKG-PVGVVSVCGRARQGKSFVLNQLL------------- 85
Query: 183 GDWLGNETDPLVGFSWKGGFQRHTGILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTV 362
G G + P KG + M+S P T G + ++L+DT G+ + T
Sbjct: 86 GRSSGFQVAPTHRPCTKG-------LWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTG 138
Query: 363 RDSSIIFALSTLISSVQIYNLIGNLQEDDLQWLQLFTEYGKLLK 494
S IF+L+ L+SS+ IYN +G + E L L L TE K ++
Sbjct: 139 TYSIQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTEMTKHIR 182
>01_07_0151 + 41518082-41518683,41519629-41519644
Length = 205
Score = 31.1 bits (67), Expect = 0.94
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Frame = +3
Query: 336 GLFDPNSTVRDSSIIFALST----LISSVQIY-NLIGNL--QEDDLQWLQLFTEYGKLLK 494
G+F P +T + I L++ L+++V Y +GNL Q DD+ + LFT G ++
Sbjct: 90 GMFSPEATSYMTPIAKYLASTGAPLMANVYPYFAYVGNLRAQIDDINYA-LFTSPGTVVP 148
Query: 495 NEDGSKAFQMLMFLIRDWFY 554
DGSKA+Q I D FY
Sbjct: 149 --DGSKAYQNQFDAIVDTFY 166
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 YVLEXNALQRILLREDVKDLPLMVVSVVGAYRGGKSFLLNYFLRYLNS--PTEKRNE 179
Y + L L+E + P ++V VVG GKS L+N R + S P + +N+
Sbjct: 115 YFYKLLGLVEFKLKEAISKEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNK 171
>11_06_0250 +
21701741-21701826,21702094-21702246,21703060-21703176,
21703288-21703402,21703604-21703624,21703710-21703757,
21704156-21704293,21704789-21704884,21704971-21705084,
21705364-21705432,21705613-21705683,21705785-21705878,
21706202-21706327,21706425-21706514,21706651-21706749
Length = 478
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 21 LEXNALQRILLREDVKDLPLMVVSVVGAYRGGKSFLLN 134
LE R L R + +P+ VVS+VG GKS LLN
Sbjct: 234 LESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLN 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,128
Number of Sequences: 37544
Number of extensions: 404611
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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