Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O12
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 155 5e-38
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28) 54 9e-08
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22) 44 1e-04
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 41 0.001
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0) 30 1.7
SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07) 30 1.7
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 155 bits (375), Expect = 5e-38
Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Frame = +3
Query: 186 DWLGNETDPLVGFSWKGGFQRHT-GILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTV 362
DWLG ET+ L GFSW+GG +R T GILM+++P+I GE+V VLLMDT G FD +STV
Sbjct: 5 DWLGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTV 64
Query: 363 RDSSIIFALSTLISSVQIYNLIGNL--QEDDLQWLQLFTEYGKLLKNED----------- 503
+D + IFALST+ SS Q++ G L + ++++ Q+ E L N +
Sbjct: 65 KDCATIFALSTMTSSTQLFTEYGKLAMENNEIKPFQVNNEIKPFLLNNEIKPFQVNNEIK 124
Query: 504 ------GSKAFQMLMFLIRDWFYPYEHAFXXXXXXXXXXXXXXITDKMPKELCDLREHIR 665
K FQ L+FL+RDW +PYE + T++ EL +R+HI+
Sbjct: 125 PFQENKEIKPFQRLLFLVRDWSFPYEANYGEAGGSQILERRLKTTERQHSELLQVRKHIK 184
Query: 666 SCFDKVSCFLMPHPG 710
CF+K+ CFLMPHPG
Sbjct: 185 ECFEKIGCFLMPHPG 199
>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
Length = 368
Score = 54.4 bits (125), Expect = 9e-08
Identities = 40/138 (28%), Positives = 65/138 (47%)
Frame = +3
Query: 75 PLMVVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNENGDWLGNETDPLVGFSWKGGFQRHT 254
P+ V+VVG + GKSFLLN + G G P V
Sbjct: 117 PIATVAVVGKFHTGKSFLLNQLM-------------GKQAGFGVGPFVR-------PETM 156
Query: 255 GILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISSVQIYNLIGN 434
GI M+ +P G++VA++ +DT G N + + +FA++TL+SS IYN +
Sbjct: 157 GIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSSYLIYNSVKI 216
Query: 435 LQEDDLQWLQLFTEYGKL 488
+ + D+ +L+L + +L
Sbjct: 217 IDQGDIDYLELLSRRTQL 234
>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
Length = 621
Score = 44.0 bits (99), Expect = 1e-04
Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Frame = +3
Query: 75 PLMVVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNENGDWLGNETDPLVGFSWKGGFQRHT 254
P+ VVSV G R GKSF+L S TEK LG+E DP +
Sbjct: 147 PVCVVSVTGPCRKGKSFIL------AKSFTEKEVFP---LGDELDP-----------KTM 186
Query: 255 GILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISSVQIYNLIGN 434
G+ ++ P G+ V+L+D+ G S ++ +I L+ L+SSV IYN G
Sbjct: 187 GLWLWVVPKQFRDDKGQPFTVVLVDSEGTKASQSQQKEDDVIVTLTLLLSSVLIYNSEGV 246
Query: 435 LQEDDL----------QWLQLFTEYGKLLKNEDGSKAFQMLMFLIRD 545
DL Q +Q+F E K E F ++L+RD
Sbjct: 247 PTASDLEQLNHVIKLCQRIQVFAE--KATDPEHAQTVFPSFVWLLRD 291
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 40.7 bits (91), Expect = 0.001
Identities = 40/127 (31%), Positives = 56/127 (44%)
Frame = +3
Query: 51 LREDVKDLPLMVVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNENGDWLGNETDPLVGFSW 230
L D+K P+ VVS+ G R GKS+++ S E LG+ DP
Sbjct: 42 LLRDIKG-PVCVVSIAGPCRKGKSYII--------SKAFNLGEIFP-LGHLMDP------ 85
Query: 231 KGGFQRHTGILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISSV 410
GI +Y A G +V V+L+D+ G+ + D +F LS L+SSV
Sbjct: 86 -----ETMGIWLYVVDQKFKDANGREVTVVLLDSEGINATGAQKSDDHSVFTLSVLLSSV 140
Query: 411 QIYNLIG 431
IYN G
Sbjct: 141 MIYNSAG 147
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 350 GVEEAWCIH*QHCHLFSC-CCSGDKWLRIH 264
GVEE+WC + C+ +S C+ D+W++++
Sbjct: 1206 GVEESWCKDNERCYAYSADQCNADEWVQLN 1235
>SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)
Length = 467
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 204 TDPLVGFSWKGGFQRHTGILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTV 362
T P GFS+ G +G+ S T+ +TG ++ L TPG P T+
Sbjct: 120 TTPATGFSFGGSTAPASGLSFGSVAASTSASTGLSISGLSSTTPGTSAPGLTL 172
>SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07)
Length = 329
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 204 TDPLVGFSWKGGFQRHTGILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTV 362
T P GFS+ G +G+ S T+ +TG ++ L TPG P T+
Sbjct: 120 TTPATGFSFGGSTAPASGLSFGSVAASTSASTGLSISGLSSTTPGTSAPGLTL 172
>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 585 LLWHRKHVHKGK 550
LLWH KHVH GK
Sbjct: 1194 LLWHAKHVHVGK 1205
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 284 HHYSNRRKGGSAVNGYTRPLRPQQHSAR*LH 376
++YS++ G S + GYT+PL QQ S R LH
Sbjct: 157 NNYSSQ-SGASMMQGYTQPLLQQQQSHR-LH 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,364,082
Number of Sequences: 59808
Number of extensions: 451883
Number of successful extensions: 1036
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -