Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O12
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 251  YGYTNVFGAIYHHYSNRRKGGSAVNGYT 334
            Y  ++   +I  H+ +   GG+++ GYT
Sbjct: 1411 YVTSSTSSSILLHWKSGHNGGASLTGYT 1438


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 424 SSGIFKKTIFSGYSYLPSTENYLKTKTAPKRFRC 525
           S G F+++I     Y P T+N   +     R RC
Sbjct: 38  SQGFFRRSIQQKIQYRPCTKNQQCSILRINRNRC 71


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 251  YGYTNVFGAIYHHYSNRRKGGSAVNGYT 334
            Y  ++   +I  H+ +   GG+++ GYT
Sbjct: 1407 YVTSSTSSSILLHWKSGHNGGASLTGYT 1434


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 460 YSYLPSTENYLKTKTAPKRF 519
           Y Y PST+   +    PKRF
Sbjct: 390 YPYHPSTQEDSEEHLTPKRF 409


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 460 YSYLPSTENYLKTKTAPKRF 519
           Y Y PST+   +    PKRF
Sbjct: 390 YPYHPSTQEDSEEHLTPKRF 409


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 84  VVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNENGDWLGNETDPL 215
           V   +  ++ G    LN+FL+   S + K N   +W  N+ + +
Sbjct: 63  VFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWEMNDINKI 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,027
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)