Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O12
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38840.1 68415.m04772 guanylate-binding family protein simila... 45 6e-05
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 31 0.78
At2g03330.1 68415.m00292 expressed protein 29 2.4
At1g67070.1 68414.m07627 phosphomannose isomerase, putative (DIN... 29 2.4
At1g33900.1 68414.m04202 avirulence-responsive protein, putative... 29 2.4
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,... 29 4.2
At5g54130.1 68418.m06739 calcium-binding EF hand family protein ... 28 7.3
At4g16442.1 68417.m02489 integral membrane family protein contai... 28 7.3
At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa... 27 9.6
At3g32960.1 68416.m04176 hypothetical protein 27 9.6
At2g20875.1 68415.m02460 hypothetical protein 27 9.6
At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein con... 27 9.6
At1g02850.3 68414.m00249 glycosyl hydrolase family 1 protein con... 27 9.6
At1g02850.2 68414.m00248 glycosyl hydrolase family 1 protein con... 27 9.6
At1g02850.1 68414.m00247 glycosyl hydrolase family 1 protein con... 27 9.6
>At2g38840.1 68415.m04772 guanylate-binding family protein similar
to SP|Q01514 Interferon-induced guanylate-binding
protein 1 (Guanine nucleotide-binding protein 1)
(Interferon-gamma inducible protein MAG-1) {Mus
musculus}; contains Pfam profile PF02263:
Guanylate-binding protein, N-terminal domain
Length = 679
Score = 44.8 bits (101), Expect = 6e-05
Identities = 40/117 (34%), Positives = 56/117 (47%)
Frame = +3
Query: 75 PLMVVSVVGAYRGGKSFLLNYFLRYLNSPTEKRNENGDWLGNETDPLVGFSWKGGFQRHT 254
P+ V+V+G YR GKSFLLN L S E G +G+ D +
Sbjct: 59 PISAVAVIGPYRSGKSFLLNQLLSL--SCYE-----GFGVGHMRDT-----------KTK 100
Query: 255 GILMYSEPFITTTATGEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISSVQIYNL 425
GI ++ P + G K +V+ +DT G + IFAL+T++SSV IYNL
Sbjct: 101 GIWVWGTP-LELEIDGVKTSVIYLDTEGFESVGKSNVYDDRIFALATVMSSVLIYNL 156
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 75 PLMVVSVVGAYRGGKSFLLNYFLRYLN----SPTEKRNENGDWL 194
P+ VVSV G R GKSF+LN L N + T K G WL
Sbjct: 69 PIGVVSVCGRARQGKSFILNQLLGRSNGFQVASTHKPCTKGLWL 112
>At2g03330.1 68415.m00292 expressed protein
Length = 385
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 441 EDDLQWLQLFTEYGKLLKNEDGSKAFQMLMFLIRDW 548
E L W+ Y L NE+G K+++ F +++W
Sbjct: 286 ESILVWISTLAAYALLNDNENGGKSWKGSFFFVQNW 321
>At1g67070.1 68414.m07627 phosphomannose isomerase, putative (DIN9)
contains Pfam profile: PF01238 phosphomannose isomerase
type I ;similar to phosphomannose isomerase GI:10834550
from [Arabidopsis thaliana]; identical to cDNA
phosphomannose isomerase (din9) partial cds GI:10834549
Length = 441
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 691 KHETLSKQERICSRRSHSSFGILSVISSFFFN 596
KH LS++E++ G + VIS+FFFN
Sbjct: 247 KHRELSEKEKLVLELEKQYTGDIGVISAFFFN 278
>At1g33900.1 68414.m04202 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 326
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 246 RHTGILMYSEPFITTTATGEKVAVLLMDTPGLFD 347
R TG+ M E + T G + V+ DTPGLFD
Sbjct: 50 RATGVTMKCETCVAVTPCGTGINVI--DTPGLFD 81
>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 848
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 260 YTRMPLKSSLPAESD*RVCFVPQPVA-IFVSL 168
+T MPL+SSLP S R C P A +F SL
Sbjct: 8 FTEMPLRSSLPLTSSSRYCSSPSLHALLFYSL 39
>At5g54130.1 68418.m06739 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 429 GNLQEDDLQWLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWFYPYEHAF 572
GN+ D WL Y KLLK F M +L+R E AF
Sbjct: 52 GNICAVDFIWLLNPNRYRKLLKTSWSEAVFGMFRYLLRRASLTAEDAF 99
>At4g16442.1 68417.m02489 integral membrane family protein contains
TIGRFAM TIGR01569 : plant integral membrane protein
TIGR01569; contains Pfam PF04535 : Domain of unknown
function (DUF588)
Length = 182
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 366 DSSIIFALSTLISSVQIYNLIGNLQEDDLQWLQLFTEYGK 485
D ++ + I++ +I E+DLQW+++ T YGK
Sbjct: 98 DQAMAYLNVAAIAATAESGVIAREGEEDLQWMRVCTMYGK 137
>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 332
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 300 GEKVAVLLMDTPGLFDPNSTVRDSSIIFALSTLISS 407
G V ++DTPG+F PN + AL+ LIS+
Sbjct: 139 GSHPNVYVLDTPGIFPPNLYDAEICAKLALTGLIST 174
>At3g32960.1 68416.m04176 hypothetical protein
Length = 214
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 144 RYLNSP-TEKRNENGDWLGNETDPLVGFSWKGGFQRHTGILMYSEPFITTTATGEKVAVL 320
R+ SP +E+R EN + E D G+SW QRHT ++ P T + E+ L
Sbjct: 4 RFKCSPDSEEREENEE----ENDEDTGYSWAKTKQRHTTDVLLHIPRDTDEDSSEERFCL 59
Query: 321 LM 326
M
Sbjct: 60 AM 61
>At2g20875.1 68415.m02460 hypothetical protein
Length = 104
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 642 IALLAFYL*FQVSFLIARHL--LWHRKHVHKGKT 547
+ LLAF+L F L+ARHL H H H G T
Sbjct: 4 LLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMT 37
>At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 471
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 343 KRPGVSINSTATFSPVAVVVINGSEYISIPVCL*NPPFQLNPTKGSVS 200
K G ++ T + V V + G + P +PPF LN TKG+ S
Sbjct: 176 KEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSS 223
>At1g02850.3 68414.m00249 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 473
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 343 KRPGVSINSTATFSPVAVVVINGSEYISIPVCL*NPPFQLNPTKGSVS 200
K G ++ T + V V + G + P +PPF LN TKG+ S
Sbjct: 176 KEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSS 223
>At1g02850.2 68414.m00248 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 497
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 343 KRPGVSINSTATFSPVAVVVINGSEYISIPVCL*NPPFQLNPTKGSVS 200
K G ++ T + V V + G + P +PPF LN TKG+ S
Sbjct: 176 KEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSS 223
>At1g02850.1 68414.m00247 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 470
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 343 KRPGVSINSTATFSPVAVVVINGSEYISIPVCL*NPPFQLNPTKGSVS 200
K G ++ T + V V + G + P +PPF LN TKG+ S
Sbjct: 176 KEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSS 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,796,392
Number of Sequences: 28952
Number of extensions: 326089
Number of successful extensions: 822
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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