Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O11
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  33   0.26 
SB_8213| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_17898| Best HMM Match : Entericidin (HMM E-Value=4.3)               30   2.4  
SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   3.2  
SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)                   29   5.5  
SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   7.3  
SB_43174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)                28   9.6  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   28   9.6  

>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 519 NFG*NRTKYTSAHVVDRDRFQAPETVSGDQY 427
           ++G +  K   A V+DRD F+A E V GDQY
Sbjct: 703 DYGDDSDKSNEAKVLDRDGFEALECVKGDQY 733


>SB_8213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 451 WGLEAIAVDYVRASIFGPILPKIAIGLVYLISI 549
           WG +A+ +DY+   +     P  A+G++Y I I
Sbjct: 211 WGKKAVQIDYIVKFVLNYAFPLFAMGILYSIMI 243


>SB_17898| Best HMM Match : Entericidin (HMM E-Value=4.3)
          Length = 532

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 526 GLVYLISIATLGGLFYIISHDVGIANGIR 612
           GL YL S+  LGG  + + H  GI NGIR
Sbjct: 193 GLYYLRSMKCLGGEVHAMHHVPGIWNGIR 221


>SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 21  VLLDFKVIFIFYYYKKVLVIYHTINNHGVLHVSSYIRMPKSNVHSTSYEA 170
           + L FK+  +   Y  ++++   +N HG LH+S   ++  SN+H  S +A
Sbjct: 129 IKLCFKISLVILPYGIIVLL--PLNLHGGLHLSGLDKLTMSNMHEKSTKA 176


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 210  AGDHTLCYCWLGR*PHSLLSEHSTLAS*CTKKHGERHGY 94
            + D   CY W GR P   + +H    +   K HGERHGY
Sbjct: 1573 SNDGRQCYPW-GRSP---VGQHPRRCASRDKTHGERHGY 1607


>SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 409 FDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPKIAIGLVYLISIATLGGLFYIISHD 588
           FDS  +I   A S+  L A+ V  +     G + P + I L+    ++ L  +FYIIS  
Sbjct: 48  FDSPRSIESIALSYGILYAVLVYILAPFSGGYVNPIVTIALLLTRKVSVLKAVFYIISQI 107

Query: 589 VG 594
            G
Sbjct: 108 TG 109


>SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 587

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +1

Query: 283 TSCVRRSAEKVEDHSRLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLE 462
           ++CV RSAE++    +L  +  VV     P   + L   +K F  L    +   +     
Sbjct: 13  SACVTRSAERIRQECKLCDVTLVVEGKEFPAHRIVLAASSKYFYGLFTSEMIEKN---AP 69

Query: 463 AIAVDYVRASIFGPILPKIAIG 528
           ++ +  +RAS+   IL  +  G
Sbjct: 70  SVKLQELRASVMNHILTYLYTG 91


>SB_43174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 507 FTQNCHRPGVSHLHCHTGRLV 569
           FTQ+  RP  +H HC +  LV
Sbjct: 309 FTQSARRPSCNHKHCDSSSLV 329


>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
          Length = 510

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 731 KLNKRVIIGDFDYY---SFTIP*NDKKKGTYDFCASDLMAQ-NCLMPLAMPTSW 582
           KL  + I+   D Y   + TIP N+  K  ++ C SD  A+ NC +  A+   W
Sbjct: 139 KLMFKQILNSSDMYYVGNRTIPANESDKNAHETCRSDSEAKANCPVRWAIMQDW 192


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 487 RARSRPRSLPGPRNCER*SVSPGESRIVCSAS*GLTE 377
           +ARSRP+S P      + S SPG S    S    LTE
Sbjct: 178 KARSRPKSTPQQSQTLQCSPSPGPSACTLSVDRQLTE 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,262,803
Number of Sequences: 59808
Number of extensions: 507448
Number of successful extensions: 1296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)