Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O08
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 99 3e-21
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 98 4e-21
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 93 1e-19
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.8
At5g08320.1 68418.m00979 expressed protein predicted proteins, H... 29 4.1
At2g27270.1 68415.m03277 expressed protein 28 5.4
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 28 7.1
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 98.7 bits (235), Expect = 3e-21
Identities = 63/171 (36%), Positives = 91/171 (53%)
Frame = +2
Query: 110 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 289
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 290 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 469
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 470 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 622
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 98.3 bits (234), Expect = 4e-21
Identities = 63/169 (37%), Positives = 90/169 (53%)
Frame = +2
Query: 116 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 295
K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------D 55
Query: 296 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 475
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 476 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 622
SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 93.5 bits (222), Expect = 1e-19
Identities = 62/169 (36%), Positives = 87/169 (51%)
Frame = +2
Query: 116 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 295
K RN DL GV ++S+S+M+HK+ + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------D 55
Query: 296 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 475
P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 476 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 622
SGLLLVTGPF N PLRR+ Q YVIGTST+I + K F+D YF
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 299 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 388
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
sapiens and Caenorhabditis elegans
Length = 150
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 562 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 425
G D + +NT + +R S ++T ++S K NP+ C + S E
Sbjct: 85 GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 326 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 505
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 506 FAFNSCPLR-RIPQ 544
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 265 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 366
W+ E Q ++PQ V L H G+ C +WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,832
Number of Sequences: 28952
Number of extensions: 316223
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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