Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O07
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1502 + 30616070-30616182,30617524-30617752,30618777-306188... 37 0.013
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 35 0.053
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 34 0.092
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 34 0.092
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 30 1.5
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 30 1.5
08_02_0854 - 21905054-21906308,21906396-21907300 30 1.5
07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900... 30 1.5
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 30 1.5
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 30 2.0
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 29 3.5
05_07_0198 - 28359092-28359457,28359574-28359729,28359844-283600... 29 4.6
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 28 6.0
11_04_0061 + 13013963-13014070,13015228-13015422,13017927-130180... 28 8.0
>06_03_1502 +
30616070-30616182,30617524-30617752,30618777-30618881,
30618961-30619063,30619150-30619342,30619627-30619678
Length = 264
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -2
Query: 510 LSLHIFAIAGYWISWHADSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 358
+S IF + I ++ A R + L+R +T L PRNSFTN+D+ L E
Sbjct: 37 MSNEIFNVVLDEIIVDLNNRFAERSTRLLRCITCLDPRNSFTNYDEDKLIE 87
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 103 FSIWXAKIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 210
F+IW ++K + N+ R DK VCCL S + L
Sbjct: 759 FNIWFEQVKKSGVRANFKREHDKKVCCLGLTSLISL 794
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 34.3 bits (75), Expect = 0.092
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 459 DSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 358
++ A R + L+R + L PRNSF NFD+ L E
Sbjct: 680 NNRFAERSTQLLRCIACLDPRNSFANFDEDKLIE 713
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 34.3 bits (75), Expect = 0.092
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 459 DSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 358
++ A R + L+R + L PRNSF NFD+ L E
Sbjct: 856 NNRFAERSTQLLRCIACLDPRNSFANFDEDKLIE 889
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 435 SSLIRSLTSLSPRNSFTNFDDISLSE 358
+ L+R + L PRNSF N+D+ L E
Sbjct: 263 TQLLRCIACLDPRNSFANYDEDKLIE 288
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 435 SSLIRSLTSLSPRNSFTNFD 376
S L+ ++SL+PRNSF+NFD
Sbjct: 628 SELLVCMSSLNPRNSFSNFD 647
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 435 SSLIRSLTSLSPRNSFTNFD 376
S L+ ++SL+PRNSF+NFD
Sbjct: 629 SELLVCMSSLNPRNSFSNFD 648
>07_03_0163 +
14588041-14588266,14588835-14589001,14589880-14590068,
14590193-14590315,14590531-14590793,14590882-14590976,
14591529-14591965,14592461-14592481
Length = 506
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 435 SSLIRSLTSLSPRNSFTNFD 376
S L+ ++SL+PRNSF+NFD
Sbjct: 465 SELLVCMSSLNPRNSFSNFD 484
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 435 SSLIRSLTSLSPRNSFTNFD 376
S L+ ++SL+PRNSF+NFD
Sbjct: 628 SELLVCMSSLNPRNSFSNFD 647
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 404 LKDVKDLINEEYLAASIESACHDIQYPAIAKICKDNTA 517
L+ + DL+NE + + S+ C + + K+C+DN A
Sbjct: 402 LQKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGA 439
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 103 FSIWXA---KIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 210
F++W ++K + N+ R DK VCCL S + L
Sbjct: 122 FNLWFGMLQQVKKSGIRANFKREHDKKVCCLGLTSLISL 160
>05_07_0198 -
28359092-28359457,28359574-28359729,28359844-28360011,
28360082-28360206,28360288-28360405,28360491-28360718,
28360959-28361099,28361433-28361498,28361770-28361862,
28361965-28362225
Length = 573
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 372 ISLSETSGFCFSHTVAVQCPTAPHSAPRFRLSHHTCGPLA 253
++LS + A + PTAP +A F +SH C PLA
Sbjct: 7 LALSHPKTLAAAAAAAPKAPTAP-AAVSFPVSHAACAPLA 45
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 435 SSLIRSLTSLSPRNSFTNFD 376
S L+ ++SL+P NSF+NFD
Sbjct: 301 SELLVCMSSLNPHNSFSNFD 320
>11_04_0061 +
13013963-13014070,13015228-13015422,13017927-13018046,
13018377-13019015
Length = 353
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 371 FHCQKHPAFVSPTQS-PYSVQPRRIQPPALDSRTILVVP*HIPSVLVAQTTNLYNKGTLE 195
FH A + T+S PY V P QPPAL+ ++P P + + T + E
Sbjct: 253 FHALLREAGMLATESAPYLVDPTLTQPPALEIVHTPLIPTPSPQLGSSMETPIQVDSKTE 312
Query: 194 TVDKQ 180
D +
Sbjct: 313 ETDTE 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,278,120
Number of Sequences: 37544
Number of extensions: 385873
Number of successful extensions: 1200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -