Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O07
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06580.1 68416.m00764 galactokinase (GAL1) identical to galac...    29   2.2  
At5g13620.1 68418.m01578 expressed protein ; expression supporte...    29   2.9  
At5g47540.1 68418.m05869 Mo25 family protein similar to MO25 pro...    28   6.7  
At4g25490.1 68417.m03671 DRE-binding protein (DREB1B) / CRT/CRE-...    28   6.7  
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a...    28   6.7  
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta...    27   8.8  

>At3g06580.1 68416.m00764 galactokinase (GAL1) identical to
           galactokinase (Galactose kinase) [Arabidopsis thaliana]
           SWISS-PROT:Q9SEE5
          Length = 496

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 404 LKDVKDLINEEYLAASIESACHDIQYPAIAKICKDNTA 517
           LK + DL+NE + + S+   C   +   + ++CK+N A
Sbjct: 392 LKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGA 429


>At5g13620.1 68418.m01578 expressed protein ; expression supported
           by MPSS
          Length = 301

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 652 GHVGAFLVQRNNIVQFHVVTHADDFAHCLGRCVRFENVMYVIFEMGRVV 506
           G V   +V  N++  F + T AD+   CL  C+ +EN    +   G+ +
Sbjct: 54  GLVSNLIVNFNSLPDFFINTVADEVVMCLS-CLSYENFSMFVANFGKKI 101


>At5g47540.1 68418.m05869 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 344

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 350 PDVSDNEISSKFVKLFRGLKDVKDLINEEYLAASIESAC 466
           PD+ D++   K  +L R ++D+K ++     A  +  AC
Sbjct: 33  PDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEAC 71


>At4g25490.1 68417.m03671 DRE-binding protein (DREB1B) /
           CRT/CRE-binding factor 1 (CBF1) / transcriptional
           activator CBF1 identical to DREB1B GI:3738225 from
           [Arabidopsis thaliana], DREB1B [Arabidopsis thaliana]
           GI:3660550, transcriptional activator CBF1 [Arabidopsis
           thaliana] GI:1899058, CRT/CRE binding factor 1
           [Arabidopsis thaliana] GI:4091982; supported by
           cDNA:gi_1899057_gb_U77378.1_ATU77378; identical to cDNA
           transcriptional activator CBF1 GI:1899057
          Length = 213

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 396 NSFTNFDDISLS--ETSGFCFSHTVAVQCPTAPHSAPRFRLSHH 271
           NSF+ F ++  S  E  G  +  T+A  CP  P    +FR + H
Sbjct: 2   NSFSAFSEMFGSDYEPQGGDYCPTLATSCPKKPAGRKKFRETRH 45


>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
           aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
           GI:3172025, GI:3172044; identical to cDNA putative
           aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
          Length = 1337

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 302 IQPPALDSRTILVVP*HIPSVLVAQTTNL 216
           + PP LD++T+L+   HIP  + + TT L
Sbjct: 388 VSPPILDTKTVLLKV-HIPRWIASSTTGL 415


>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 502

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 396 NSFTNFDDISLSETSGFCFSHTVAVQCPTAPHSAPRFRLSHHTCGPLAHSFG 241
           N   N+     +   G+CF   + +    A +   RF L   T G +A SFG
Sbjct: 256 NGIKNYRGWITALAYGYCFGVELTIDNIIAEYFFDRFHLKLQTAGIIAASFG 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,326
Number of Sequences: 28952
Number of extensions: 316234
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)