Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O04
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 156 3e-39
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 136 3e-33
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 79 8e-16
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 77 3e-15
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 74 2e-14
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 44 2e-05
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 4.5
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 26 4.5
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 4.5
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 156 bits (378), Expect = 3e-39
Identities = 75/161 (46%), Positives = 97/161 (60%)
Frame = +2
Query: 218 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 397
GLFINN+ V S G K +P+ ++I EV F+ +PWR
Sbjct: 24 GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83
Query: 398 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 577
+++RG +++LAD IE++ YLAS+ETLDNGK + GD+ A+ RYY GWADK +
Sbjct: 84 SAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLAR-GDVQAAADCFRYYGGWADKDY 142
Query: 578 GNVLPADGKYFAYTRHEPXGVCGQIIPWNFPILMAAWXLGP 700
G + D K FAYTRHEP GVCGQIIPWNFP LM AW + P
Sbjct: 143 GQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAP 183
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 136 bits (329), Expect = 3e-33
Identities = 67/161 (41%), Positives = 97/161 (60%)
Frame = +2
Query: 218 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 397
GL+IN EW KS++ T++T +P+ +VIA+V FK W+ +
Sbjct: 22 GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76
Query: 398 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 577
SE+G L+ KLA+L E+ LA++E +D+GKP + GD+ +I LRY AGWADKI+
Sbjct: 77 GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIY 136
Query: 578 GNVLPADGKYFAYTRHEPXGVCGQIIPWNFPILMAAWXLGP 700
G V+P + AY + P GVCGQI+PWN+P+ MA W + P
Sbjct: 137 GQVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAP 177
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 78.6 bits (185), Expect = 8e-16
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Frame = +2
Query: 224 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 403
F+ +W+ S + KTF+ +NPA G++I +V FK ++
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77
Query: 404 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGN 583
+R L+ + A+LI ++ L + TL+NGKP + ++ L++YA A + G+
Sbjct: 78 QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEM-EVTTCSGYLKWYAAEAVRTFGD 136
Query: 584 VLPA--DGKYFAYTRHEPXGVCGQIIPWNFPILMAA 685
V P+ + F + +P GV I PWNFP M A
Sbjct: 137 VAPSSLQSQNFLISIKQPVGVSALITPWNFPAAMIA 172
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 76.6 bits (180), Expect = 3e-15
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 1/159 (0%)
Frame = +2
Query: 224 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 403
+I +WV ++ GKTF ENP + +A V F +R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83
Query: 404 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHG- 580
ER A++ + DLI + LA++ TL+NGK D+ G++ + K + ++AG A +I G
Sbjct: 84 ERYAILRRWYDLIMENADDLATMMTLENGKALGDAK-GEVVYAAKFIDWFAGEALRISGD 142
Query: 581 NVLPADGKYFAYTRHEPXGVCGQIIPWNFPILMAAWXLG 697
+ + ++ + T +P GV G I PWNFP M +G
Sbjct: 143 SSMSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVG 181
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 73.7 bits (173), Expect = 2e-14
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Frame = +2
Query: 221 LFINNEWVKSSD--GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTM 394
LFI+ ++V + K NPA ++I + F+ G W
Sbjct: 23 LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKW 81
Query: 395 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKI 574
+RG ++ K+A ++ R LA ++T++ GKP + F D+ + YYA A+
Sbjct: 82 PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALF-DIDSCADMFEYYAEVAETD 140
Query: 575 HGNV---LPADGKYFAYTRHEPXGVCGQIIPWNFPILMAAWXLGP 700
+ V LP + + A+ + P GV G I PWNFP+ MA W L P
Sbjct: 141 NPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVP 185
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = +2
Query: 383 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRY-YAG 559
W++ +ER + L + I R++ A + D GK D+ FG++ +++ + + A
Sbjct: 41 WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLAN 100
Query: 560 WADKIHGNVLP---ADGKYFAYTRHEPXGVCGQIIPWNFPILMAAWXLGP 700
+ P Y ++EP GV ++ WN+P+ A LGP
Sbjct: 101 GEQSLRPTKRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNA---LGP 147
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 556 RVGRQDPRECSA-RRRKILCLHSSRAXGCVRSDNTMELPYIDGG 684
+ R+ C A RR+K+ C H C++ YID G
Sbjct: 14 QTSRRAIHSCLACRRKKLKCDHGRPCSNCLKRSTIQSCIYIDPG 57
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 560 TRRSTVGFLLKHTDHRNTSP 501
+RRST GFL KH+ ++ SP
Sbjct: 19 SRRSTKGFLQKHSSLKDGSP 38
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 188 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFI 42
+P + L+ ++ + +C R AT +Y Y P + +S+SYR I
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,394
Number of Sequences: 5004
Number of extensions: 58027
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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