Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O03
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.2  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 408 VDSNAVFFSVTVPDTGLYTSAAAFTLSRAPLSSPAD 301
           + +N  + + ++P  GLYT +A    S   + SP D
Sbjct: 61  IQNNFEYDTASLPLPGLYTKSANTIRSFTHVESPID 96


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 333 LSRAPLSSPADISWPTSGSCINTTSPNA 250
           + R P+    + S  TSGS  +++SP++
Sbjct: 43  VKREPMDEDKNDSGVTSGSDFHSSSPSS 70


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 561 IPSYGYGQWPDS 526
           + S+G  QWPD+
Sbjct: 476 VQSWGASQWPDT 487


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,337
Number of Sequences: 336
Number of extensions: 3182
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)