Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O03
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 138 7e-34
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 31 0.20
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 28 1.1
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 28 1.1
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 4.3
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 5.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 7.5
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.9
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 138 bits (334), Expect = 7e-34
Identities = 64/128 (50%), Positives = 94/128 (73%)
Frame = +2
Query: 146 YYSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGA 325
YYST +++TK+HEWV +D ++GTVG++ YA +ALGEVVF++LP+ +S GD GA
Sbjct: 41 YYST----KHFTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGDGIGA 96
Query: 326 LESVKAAAEVYSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQP 505
+ESVK+A++VYSPVSGTVT N +L +P V+ S EGW+ +IKLS+ DE++ L++
Sbjct: 97 VESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDE 156
Query: 506 TYDNYLKE 529
+Y + KE
Sbjct: 157 SYAQFCKE 164
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 30.7 bits (66), Expect = 0.20
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 191 HVSWCSTSFCFQCCNT 144
H WC FC+ CCN+
Sbjct: 48 HCRWCGKLFCYNCCNS 63
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.1
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +2
Query: 443 GWLFRIKLSNRDEVQHLMDQ 502
GW+F ++ +++DE++ L+DQ
Sbjct: 510 GWVFSVERTSKDEIEMLLDQ 529
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +2
Query: 143 LYYSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESG 322
+Y S+++ R T H + N GTV ++ A G+VV + ++ SG
Sbjct: 62 IYPSSKSSGRG-TTNHSTIYTTINSGTVASTYTVTLADGDVVVKDIEPTAGTVTTTITSG 120
Query: 323 ALESVKAAAEVYSPVSGTV 379
+ E AE V GTV
Sbjct: 121 SHEFTTTLAEASGTVPGTV 139
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 408 VDSNAVFFSVTVPDTGLYTSAAAFTLSRAPLSSPADIS 295
+ +NA F TVP T L T+ AF L+ LSS +S
Sbjct: 97 ISANATDF--TVPQTNLETTGIAFQLTVNSLSSSNQLS 132
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 383 EKNTALESTPSLVNKSCYGEGWLFRIKLSNRD 478
+++++L T + KS Y E W I +S+RD
Sbjct: 142 DRHSSLNGTQIISYKSNYNEEWFTLIGISSRD 173
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -3
Query: 423 FTNEGVDSNAVFFSVTVPDTGLYTSAAAFTLSRAPLSSP--ADISWPTSGSCINTTSPNA 250
FT+ +S S ++P T + +A + S A S P D+S T S T P
Sbjct: 133 FTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPP 192
Query: 249 S*A*CDTPTVPMFSSIDTHSCF 184
+ + T+ S I + S F
Sbjct: 193 ASSTSSFSTITNTSMIPSSSSF 214
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 393 VFFSVTVPDTG-LYTSAAAFTLSRAPLSSPADISWPTSGSCINTTSPNAS 247
+++SV + G L T+ ++ ++S SS + S P+S S TTSP++S
Sbjct: 111 LYWSVYLTGNGVLQTTVSSSSVSSTTSSSSS--SSPSSSSTTTTTSPSSS 158
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 65 AAQSVQRHGSQVSAXSGSNA 124
A QS+QRHG V+A S A
Sbjct: 132 AVQSIQRHGPDVAAPSSQPA 151
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 384 KRTQHWSLHLRW*ISLVTGKVGCSASSSQTGMRCSI 491
K ++W L L +SLVTG + A S+Q M +
Sbjct: 54 KFRKNWHLVLICLVSLVTGAIANDAGSAQDQMNAEL 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,484
Number of Sequences: 5004
Number of extensions: 50883
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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