Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O03
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0525 + 3828035-3828116,3829173-3829261,3829446-3829616,382... 122 2e-28
10_08_0626 + 19375760-19375868,19376229-19376317,19376846-193770... 120 8e-28
06_03_1060 - 27275799-27275957,27276017-27276187,27276372-272764... 107 8e-24
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 106 1e-23
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 35 0.068
04_01_0054 - 559672-560652 32 0.48
08_02_0719 + 20388246-20390756,20391159-20391263 30 1.9
03_05_1030 - 29844628-29845059,29845161-29845245,29845989-298460... 29 2.6
11_06_0690 + 26303733-26306540 29 3.4
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 29 4.5
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 28 7.8
>02_01_0525 +
3828035-3828116,3829173-3829261,3829446-3829616,
3829696-3829824
Length = 156
Score = 122 bits (295), Expect = 2e-28
Identities = 55/127 (43%), Positives = 80/127 (62%)
Frame = +2
Query: 149 YSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGAL 328
+ST K Y HEWV ++ + TVG++ +AQ LG+VV+++LP+VG +S G GA+
Sbjct: 25 FSTVLKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVGSSVSQGKNFGAV 84
Query: 329 ESVKAAAEVYSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPT 508
ESVKA +++YSPVSG V N L P LVN S Y GW+ ++K+S+ E+ LMD
Sbjct: 85 ESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSLMDDAK 144
Query: 509 YDNYLKE 529
Y + +E
Sbjct: 145 YSKFCEE 151
>10_08_0626 +
19375760-19375868,19376229-19376317,19376846-19377016,
19377347-19377472
Length = 164
Score = 120 bits (290), Expect = 8e-28
Identities = 53/128 (41%), Positives = 81/128 (63%)
Frame = +2
Query: 146 YYSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGA 325
Y+ST Y+ HEWV D ++ T+G++ +AQ LGEVVF++LP+ G ++S G G
Sbjct: 33 YFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGN 92
Query: 326 LESVKAAAEVYSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQP 505
+ESVKA +++ SP+SG V E N L TP L+N S Y +GW+ ++K S+ E+ L+D
Sbjct: 93 VESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPA 152
Query: 506 TYDNYLKE 529
Y + +E
Sbjct: 153 KYTKHCEE 160
>06_03_1060 -
27275799-27275957,27276017-27276187,27276372-27276460,
27277381-27277474
Length = 170
Score = 107 bits (257), Expect = 8e-24
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 10/137 (7%)
Frame = +2
Query: 149 YSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGAL 328
+ST K Y HEWV ++ + T+GV+ +AQD LG+VV+++LP+VG +S G GA+
Sbjct: 29 FSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGTNFGAV 88
Query: 329 ESVKAAAEVYSPVSGTVTEKNTALESTPSL----------VNKSCYGEGWLFRIKLSNRD 478
ESVKA +++ +PVSG + + N L P +N S Y +GW+ ++K+S+
Sbjct: 89 ESVKATSDINAPVSGEIIQVNDELSEKPGFLTICFCNFTQINGSPYEKGWIIKVKISDPS 148
Query: 479 EVQHLMDQPTYDNYLKE 529
E+ LMD Y + +E
Sbjct: 149 ELNSLMDDEKYKKFCEE 165
>02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 106 bits (255), Expect = 1e-23
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Frame = +2
Query: 176 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAE- 352
Y++ HEWVS++ + T+G+S +AQD LG V ++LP+VGQ +S G++ G + SVK
Sbjct: 784 YSETHEWVSVEGDYATIGISDHAQDHLGYVASVELPEVGQSVSQGNKFGVVVSVKGTTRG 843
Query: 353 VYSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTYDNYLK 526
+ SPVSG V E N L P LVN Y GW+ +K+S+ E+ LM+ Y + K
Sbjct: 844 INSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKISDSGELNSLMNDEDYSKFCK 901
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 176 YTKKHEWVSIDENIGTVGVSHYAQDALGEV 265
Y++ HEWVS++ + T+G+S +AQ G V
Sbjct: 814 YSENHEWVSVEGDYATIGISDHAQILGGAV 843
>04_01_0054 - 559672-560652
Length = 326
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -3
Query: 354 TSAAAFTL---SRAPLSSPADISWPTSGSCINTTSPNAS 247
+SA AF + S PL+S +S PT G + TT+PNA+
Sbjct: 101 SSAVAFVVLLDSFPPLASHRGVSAPTDGGAMTTTNPNAT 139
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/84 (21%), Positives = 36/84 (42%)
Frame = +2
Query: 80 QRHGSQVSAXSGSNAGCCXHALYYSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALG 259
+ H V+ G A Y +NK++ + H W++++E+ T + L
Sbjct: 182 ESHRQMVALVGMPGVGKTSLARYVYEDNKVKGHFNCHAWMTVEESCATKQLLLGMISRLY 241
Query: 260 EVVFIQLPDVGQEISAGDESGALE 331
E ++LPD + + SG ++
Sbjct: 242 EEANVRLPDAINIMDEDELSGMIQ 265
>03_05_1030 -
29844628-29845059,29845161-29845245,29845989-29846087,
29846478-29846566,29847583-29847633
Length = 251
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 427 LIHQRRCRLQCCVLFCHRSRHRTVYF 350
L+ CRL C VL CHR TV +
Sbjct: 30 LVRNWECRLACAVLECHRFNLETVQY 55
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -3
Query: 351 SAAAFTLSR-APLSSPADISWPTSGSCINTTSPNAS*A*CDT-PTVPMFS 208
S A L+R A S+ + +SWPT+G T+S AS A D+ P P+FS
Sbjct: 766 SPLATLLARSAETSAASPVSWPTAGPPGVTSSTAASVASPDSQPHTPLFS 815
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 385 FCHRSRHRTVYFSCCLHALEGPALVTG 305
F H+S+ V F L+ LEGP LV G
Sbjct: 252 FLHKSKKMYVMFEKLLNKLEGPVLVLG 278
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 245 EHNVILLRFRCFRQLTPIHVSWC--STSFCFQCCNTT 141
++ VI + CF ++ I VS T FCF CC+ T
Sbjct: 363 DNGVIKSKRPCFLRIGSISVSMSIHQTHFCFVCCHLT 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,704
Number of Sequences: 37544
Number of extensions: 339820
Number of successful extensions: 897
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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