Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O03
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)                      144   8e-35
SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)                      109   2e-24
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_2675| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   29   2.6  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   4.5  

>SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)
          Length = 178

 Score =  144 bits (348), Expect = 8e-35
 Identities = 61/112 (54%), Positives = 86/112 (76%)
 Frame = +2

Query: 176 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEV 355
           YT KHEWV ++  IGT+GV+ YAQ  LG++V++QLP+VG + S  +E GALESVKAA+++
Sbjct: 57  YTPKHEWVVVENGIGTIGVTDYAQSNLGDIVYVQLPEVGDKFSMEEEFGALESVKAASDL 116

Query: 356 YSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTY 511
           YSP SG +TE N+ LE  PSL+NKS YG+GW+ +++LSN  E+  L+D+  Y
Sbjct: 117 YSPTSGKITEINSQLEEDPSLINKSPYGDGWIVKMELSNPSELDDLLDEEAY 168


>SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)
          Length = 126

 Score =  109 bits (263), Expect = 2e-24
 Identities = 43/112 (38%), Positives = 76/112 (67%)
 Frame = +2

Query: 176 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEV 355
           YTK HEWVSI+ +I TVG++ +AQ  LG++V++++  + Q +   +  G +E+VK  +++
Sbjct: 9   YTKDHEWVSIEGDIATVGITDFAQKELGDIVYVEVETLDQTLDRDEVFGTVEAVKTVSDL 68

Query: 356 YSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTY 511
           + P+SG + E N +LE+TP  VN   YG+GW+ +IK+S+  +++ L+    Y
Sbjct: 69  FLPLSGEIIEFNDSLETTPETVNSDPYGDGWMVKIKISDNSQIESLLSSEDY 120


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +2

Query: 215  IGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEVYSPVSGTVTEKNT 394
            +  V +  Y +DA G+ +  +L D G+ I   D+ G L   ++  ++  P+S TVT +++
Sbjct: 832  VPVVKLDVYDKDA-GDRLTFELSDEGERIFTIDDEGQLIPTRSVNDITEPLSFTVTVRDS 890

Query: 395  A 397
            A
Sbjct: 891  A 891


>SB_2675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 448 PTFPVTRLIHQRRCRLQCCVLFCHRSRHRTVYF 350
           PT+ + RL+H R  R  CC     RS    +YF
Sbjct: 25  PTYDLLRLLHARGTRTPCCKRESVRSWRENIYF 57


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = -3

Query: 480 SSRFESLMRNS-QPSP*QDLFTNEGVDSNAVFFSVTVPDTGLYTSAAAFTLS---RAPLS 313
           S+    L R++ QP+    +F ++ + S+   F     +TGL+ S++A T +   R  ++
Sbjct: 702 STTSSGLFRSTTQPTTSSAVFGSQPLSSSGGLFGSQPTNTGLFGSSSAPTSTSPFRGSVN 761

Query: 312 SPADISWPTSG-SCINTTSPNAS 247
           +PA  + P+ G S    TSP AS
Sbjct: 762 TPAFGATPSFGSSSTQATSPFAS 784


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 378 TVPDTGLYTSAAAFTLSR-APLSSPADISWPTSGSCINTTS 259
           ++P+   Y    A ++S  AP+ SP D S+PT G+    TS
Sbjct: 833 SIPEPLPYKQVNALSISETAPICSPPDFSFPTLGNEKKVTS 873


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,284,152
Number of Sequences: 59808
Number of extensions: 401470
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)