Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O03
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35120.1 68415.m04308 glycine cleavage system H protein, mito...   128   4e-30
At1g32470.1 68414.m04007 glycine cleavage system H protein, mito...   116   1e-26
At2g35370.1 68415.m04336 glycine cleavage system H protein 1, mi...   112   2e-25
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    28   4.9  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    28   6.5  

>At2g35120.1 68415.m04308 glycine cleavage system H protein,
           mitochondrial, putative similar to SP|Q39732 Glycine
           cleavage system H protein, mitochondrial precursor
           {Flaveria anomala}; contains Pfam profile PF01597:
           Glycine cleavage H-protein
          Length = 156

 Score =  128 bits (308), Expect = 4e-30
 Identities = 56/118 (47%), Positives = 78/118 (66%)
 Frame = +2

Query: 176 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEV 355
           Y   HEWV ID N  T G++ +AQD LG+VV+++LPDVG  +S G   GA+ESVKA +++
Sbjct: 34  YADSHEWVKIDGNKATFGITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDI 93

Query: 356 YSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTYDNYLKE 529
            SPVSG V E N  L  +P LVN S Y +GW+ +++LS+  E + LMD   Y  + +E
Sbjct: 94  NSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEE 151


>At1g32470.1 68414.m04007 glycine cleavage system H protein,
           mitochondrial, putative similar to SP|P25855 Glycine
           cleavage system H protein 1, mitochondrial precursor
           {Arabidopsis thaliana}; contains Pfam profile PF01597:
           Glycine cleavage H-protein
          Length = 166

 Score =  116 bits (280), Expect = 1e-26
 Identities = 50/118 (42%), Positives = 76/118 (64%)
 Frame = +2

Query: 176 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEV 355
           Y   HEWV  + ++ T+G++ +AQD LGEVVF++LP+    +S     GA+ESVKA +E+
Sbjct: 44  YANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEI 103

Query: 356 YSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTYDNYLKE 529
            SP+SG V E NT L  +P L+N S Y +GW+ ++K S+  E++ LM    Y  + +E
Sbjct: 104 LSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEE 161


>At2g35370.1 68415.m04336 glycine cleavage system H protein 1,
           mitochondrial (GDCSH) (GCDH) identical to SP|P25855
           Glycine cleavage system H protein 1, mitochondrial
           precursor {Arabidopsis thaliana}
          Length = 165

 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/127 (39%), Positives = 79/127 (62%)
 Frame = +2

Query: 149 YSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGAL 328
           +ST  +   Y   HEWV  + ++ T+G++ +AQD LGEVVF++LP+    +S     GA+
Sbjct: 34  FSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAV 93

Query: 329 ESVKAAAEVYSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPT 508
           ESVKA +E+ SP+SG + E N  L  +P L+N S Y +GW+ ++K S+  E++ LM    
Sbjct: 94  ESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKE 153

Query: 509 YDNYLKE 529
           Y  + +E
Sbjct: 154 YTKFCEE 160


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 339 FTLSRAPLSSPADISWPTSGSCINTTSPN 253
           F+    PLSSP  ++ P  GS I + SP+
Sbjct: 369 FSSDAVPLSSPRGMASPVRGSAIRSASPS 397


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 26  PLHALLXAPSCSRAAQSVQRHGSQVSAXSGSNAG 127
           P  A + A     AAQ++Q H SQ+ A + SN G
Sbjct: 303 PSAAAMAAAQAIVAAQALQAHASQMQAQAQSNKG 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,953
Number of Sequences: 28952
Number of extensions: 266714
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)