Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O01
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 34 0.014
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.22
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 29 0.69
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 1.6
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 2.1
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 27 2.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 3.7
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 4.8
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 6.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 6.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 6.4
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 8.5
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.5
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 148 ELWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEE 312
EL D + + + + G ++L+ + KER +IE EYA KL L Y K+ +
Sbjct: 11 ELHDDFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQKLASLSNKYGEKKSRK 65
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 307 EEDEYQYTACKAFKQLLQELGDFAGQREVVAEN--LQSNVVRELHLLAKELREERKQH 474
E D Y Y A + L+ G F V E L ++++ + H L +ELR+E+ QH
Sbjct: 385 ERDLYPYQMKLASLENLRVNGKFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQH 442
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 382 QREVVAENLQSNVVRELHLLAKELREERKQ-HLNEGA 489
+++V+ EN + + E L + L++ERK+ H NEGA
Sbjct: 63 RKKVIEENRKKEEIEERILTDRILQQERKKSHANEGA 99
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/81 (27%), Positives = 29/81 (35%)
Frame = +1
Query: 208 DKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQR 387
DKY R L +L + + P R + +Q K L Q L DF G
Sbjct: 230 DKYSILSAARLRSRLRMGLSSEQLSEMF-PNRMDFSRFQIERLKERNDLTQRLMDFTGMN 288
Query: 388 EVVAENLQSNVVRELHLLAKE 450
E + S RE L+ E
Sbjct: 289 EFGPSRVVSEKNREYILVKNE 309
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 473 CCFLSSRNSLASRCNSRTTFD*RFSATTSRCPAKSPNSCSNCLNALH 333
CC SSR++ SR N T +R P CS+ +NA H
Sbjct: 448 CCLASSRSTSISRKNRYTDI---VPYDKTRVRLAVPKGCSDYINASH 491
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 524 EPIEVFRTPICFAPSFKCCFLSSRNSLASRCNSRTT 417
EP + P+C+AP LS R S + C S +
Sbjct: 163 EPDDFVECPVCYAPLSSFKTLSERESHVANCLSNNS 198
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 463 FPLAILWRAGATLGLHLIEDFPRQLLV 383
FP+ + W G G H EDF +L+
Sbjct: 716 FPIVLQWTGGRAGGHHSFEDFHSPILL 742
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 319 YQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVREL 432
Y + +AFK ++ G ++G V ENL+ ++V L
Sbjct: 116 YHPSPFQAFKHIIDNGGKYSGLDRVFLENLRKSLVVSL 153
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 262 GKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAE 402
GKL++++K + K++++ ++ +G F ++E +AE
Sbjct: 282 GKLKKILKMLEKDSKKDEKTKFEESDICISQCSSMGSFGPKQEYIAE 328
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Frame = +1
Query: 232 ERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELG---DFAGQRE--VV 396
E+ A+EL+Y+ L+ + E+E + K F++ G D +E V+
Sbjct: 706 EKQALELKYSSLKNELINAQNLLDRREEELSELSKKLFEERKIRSGSNDDIEKNKEINVL 765
Query: 397 AENLQSNVVRELHLLAKELR-EERKQHLNEGAKQMGVLNTSI 519
L + + HL + ++ ++ HLN G ++ + ++
Sbjct: 766 NSELADKLAQIRHLESDKMELDKLVHHLNRGIEEANIEENAV 807
Score = 25.0 bits (52), Expect = 8.5
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +1
Query: 166 DNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKR-KEEDEYQYTACKA 342
D+++++ + + +K +ER +I ++ R NYQ ++++E + +
Sbjct: 949 DDISSYNKQTTKLQEKIKWLERER-SILIDELESYRSNQFNYQNNLVQDKNELE----ER 1003
Query: 343 FKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLN 480
K++ +EL + AE + SNV E L+ K LRE + N
Sbjct: 1004 LKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQSKTN 1049
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 577 LFPTPSPHVRTLAWLVPVNLSKCSE 503
LFP P P V++LA PV++ +E
Sbjct: 389 LFPPPPPRVKSLATNKPVSMPVSTE 413
>SPCPB16A4.05c |||urease accessory protein UREG
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = -3
Query: 73 HKSGKHKKLQNKXHKEDFLKHDHH 2
HK G + H D HDHH
Sbjct: 7 HKGGSDDSTHHHTHDYDHHNHDHH 30
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 8.5
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +1
Query: 169 NLAAHTHKGIEFLDKYGNFV--KERCAIELEYA-GKLRRLVKNYQPKRKEEDEYQYTACK 339
NL T ++ L+K + + +E+ ++L YA LR K + + ++ED
Sbjct: 24 NLKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEKED-------- 75
Query: 340 AFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGAK 492
F GD +++ + L K+++E KQH + +K
Sbjct: 76 TFLNSFNASGDLTANKKIQLREQSRKLEESLLSYHKKVKEMEKQHRSASSK 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,495
Number of Sequences: 5004
Number of extensions: 46411
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -