Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O01
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0028 - 5118621-5119448 33 0.17
11_04_0375 + 16933688-16933703,16936291-16937063 29 2.8
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 5.0
10_06_0186 + 11595041-11595182,11596442-11596473,11596628-115967... 28 6.6
04_04_1638 + 34974369-34974764 28 6.6
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 27 8.7
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 27 8.7
>03_02_0028 - 5118621-5119448
Length = 275
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 420 SPRVA-PARQRIARGKKATFKRRSKTNGSSEHFDRFTGTSQASVRTCGEGVG 572
+PR+ AR R+ R ++ +R +GSS FT + +CG GVG
Sbjct: 95 TPRLKIDARSRLRRSRRRLHRRADPVSGSSGDSGWFTSDEDSYANSCGVGVG 146
>11_04_0375 + 16933688-16933703,16936291-16937063
Length = 262
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 396 RGKSSIKCSPRVAPARQRIARGKKAT 473
+GK+SIK +P + A QR++R KK +
Sbjct: 229 KGKNSIKGNPLIRIASQRVSRSKKGS 254
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 265 KLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENL-QSNVVRELHLL 441
KL ++V++ + + + +E + CK + Q+LG +E++ NL Q ++ + L
Sbjct: 850 KLLKIVESLKCELEAANEEKINGCKEVASMQQQLGLSIKDQELLHSNLAQIEELKRENTL 909
Query: 442 AKELREERKQHLNEGAK 492
K E +Q L + K
Sbjct: 910 LKGKNAEMEQELLKAQK 926
>10_06_0186 +
11595041-11595182,11596442-11596473,11596628-11596722,
11596841-11596925
Length = 117
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 407 RFSATTSR-CPAKSPNSCSNCLNALHAVYWY 318
RFS T SR C A S +N N + +VYW+
Sbjct: 25 RFSGTISRRCDAVSAVGGANSGNGIESVYWW 55
>04_04_1638 + 34974369-34974764
Length = 131
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 396 RGKSSIKCSPRVAPARQRIARGKKATFKRRSKTNGSSEHFDRFTG 530
RG + + AP RG A KR+ K+N + HF R G
Sbjct: 72 RGLRRNRNTSMFAPPAHGEIRGAHAASKRKRKSNAADSHFRRARG 116
>04_04_0350 +
24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 259 AGKL--RRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVREL 432
AGK+ ++ N + KRK E + L D AGQ+ ++ ++ V L
Sbjct: 236 AGKIVGSQVKSNLKSKRKTIIEKSRVSSDEVNVAKGLLPDNAGQKNIMKHDVIRETVPSL 295
Query: 433 HLLAKELREERK 468
H++A+E + K
Sbjct: 296 HVVAEETENDSK 307
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 NMETLSRRGAL*N*NMQ-ENSGGLSKIINQKGKKKMNTSIQHVKHLNS 352
N ETLSR MQ E++ LSKI ++ K + IQ V+ LNS
Sbjct: 571 NSETLSREHKEFMSKMQQEHASWLSKIQQERQDLKRDIDIQRVELLNS 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,676
Number of Sequences: 37544
Number of extensions: 287016
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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