Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_O01
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 76 2e-14
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 76 2e-14
U41749-8|AAB52489.2| 592|Caenorhabditis elegans Toca (transduce... 71 5e-13
U41749-7|AAM54198.1| 529|Caenorhabditis elegans Toca (transduce... 71 5e-13
U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical pr... 30 1.1
U61947-5|AAB03134.1| 723|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z92815-3|CAB07291.1| 307|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z92777-3|CAB07169.1| 351|Caenorhabditis elegans Hypothetical pr... 28 5.9
U23519-8|AAK31503.3| 734|Caenorhabditis elegans Hypothetical pr... 28 5.9
U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL021493-3|CAA16390.2| 243|Caenorhabditis elegans Hypothetical ... 27 7.7
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 7.7
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 157 DQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEY--QYT 330
D + L ++T KGI+F +K G F KE+ AIE EY+ KLR L K Y K +E+DE +
Sbjct: 12 DPSNALLSYTQKGIDFFEKLGQFSKEKAAIEEEYSTKLRSLAKKYAKKSEEDDEILKSVS 71
Query: 331 ACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNE 483
+F LQ+L A + + AE+++ VV + ++R RK +N+
Sbjct: 72 YTSSFNSFLQQLDQIATRHQTSAEHIRGGVVSYVASKTCQMRSSRKNAIND 122
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 157 DQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEY--QYT 330
D + L ++T KGI+F +K G F KE+ AIE EY+ KLR L K Y K +E+DE +
Sbjct: 12 DPSNALLSYTQKGIDFFEKLGQFSKEKAAIEEEYSTKLRSLAKKYAKKSEEDDEILKSVS 71
Query: 331 ACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNE 483
+F LQ+L A + + AE+++ VV + ++R RK +N+
Sbjct: 72 YTSSFNSFLQQLDQIATRHQTSAEHIRGGVVSYVASKTCQMRSSRKNAIND 122
>U41749-8|AAB52489.2| 592|Caenorhabditis elegans Toca (transducer
of cdc42-dependentactin assembly) homolog protein 1,
isoform a protein.
Length = 592
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +1
Query: 136 SWGVELWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEED 315
SW +LWDQ L +T KGI+ L++ + KER +IELEY+ KL+ L K K K E
Sbjct: 6 SWD-QLWDQQGTLNEYTGKGIDLLERIMAYSKERASIELEYSSKLKALSKKTAMKMKSES 64
Query: 316 EY--QYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQ 471
E + K F ++ + A Q E++AENL+S V+ E R +KQ
Sbjct: 65 ELWNSVSYVKGFHDVIAGIVPVATQHELIAENLKSAVIPFTTQKIAEYRVAKKQ 118
>U41749-7|AAM54198.1| 529|Caenorhabditis elegans Toca (transducer
of cdc42-dependentactin assembly) homolog protein 1,
isoform b protein.
Length = 529
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +1
Query: 136 SWGVELWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEED 315
SW +LWDQ L +T KGI+ L++ + KER +IELEY+ KL+ L K K K E
Sbjct: 6 SWD-QLWDQQGTLNEYTGKGIDLLERIMAYSKERASIELEYSSKLKALSKKTAMKMKSES 64
Query: 316 EY--QYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQ 471
E + K F ++ + A Q E++AENL+S V+ E R +KQ
Sbjct: 65 ELWNSVSYVKGFHDVIAGIVPVATQHELIAENLKSAVIPFTTQKIAEYRVAKKQ 118
>U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical
protein C18H2.4 protein.
Length = 934
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 112 FTYTKKHIEAXLTHKSGKHKKLQNKXHKEDFLK 14
F Y +K++ LTH S + KKL N +ED +K
Sbjct: 89 FNYDEKNLLKILTHISEESKKLVNAVSREDVVK 121
>U61947-5|AAB03134.1| 723|Caenorhabditis elegans Hypothetical
protein C06G3.4 protein.
Length = 723
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 269 SGGLSKIINQKGKKKMNTSIQHVKHLN 349
+G K +GKKK+N +I+ +KHLN
Sbjct: 189 NGNFWKTWESEGKKKLNETIEKMKHLN 215
>Z92815-3|CAB07291.1| 307|Caenorhabditis elegans Hypothetical
protein W01F3.2 protein.
Length = 307
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 422 TTFD*RFSATTSRCPAKSPNSCSNCLNALHA 330
TT + RF+A T R P+ +S S C N + A
Sbjct: 97 TTINPRFTAATKRLPSSDRHSSSGCPNRIDA 127
>Z92777-3|CAB07169.1| 351|Caenorhabditis elegans Hypothetical
protein C17H1.5 protein.
Length = 351
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 271 RRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENL--QSNVVRELHL-L 441
R+ V+ + K K E E T K K+ +E + E+ NL Q ++HL
Sbjct: 76 RKSVEQLKEKHKNETEKLETQIKEIKEKGEE---DVRKVELQRANLEKQRTEALDIHLET 132
Query: 442 AKELREERKQHLNEGAKQMGVLN 510
KEL E++ + + + K+ +LN
Sbjct: 133 MKELNEKKFEEIRQQRKEQNILN 155
>U23519-8|AAK31503.3| 734|Caenorhabditis elegans Hypothetical
protein F26G1.6 protein.
Length = 734
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 213 IWKLCQGEVRYRTRICRKTQEACQKLSTKKER 308
+W++C GEVR + T+ A QK TKK++
Sbjct: 430 LWEVCVGEVRENLAMPLSTEYA-QKFFTKKDK 460
>U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical
protein C37A2.8a protein.
Length = 336
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +1
Query: 229 KERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENL 408
KER A + E + KLR + KN + R+EEDE + A + + EL D + VV NL
Sbjct: 87 KERQARKDE-SRKLR-IEKNERAVRREEDEARLMAAQQKLREKSELYDRMQEGNVVLANL 144
Query: 409 QSNVVREL 432
V L
Sbjct: 145 DDTPVEFL 152
>AL021493-3|CAA16390.2| 243|Caenorhabditis elegans Hypothetical
protein Y51A2B.3 protein.
Length = 243
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/78 (25%), Positives = 29/78 (37%)
Frame = +1
Query: 277 LVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELR 456
+VK Y E E Y C+ GQ + E + LH K LR
Sbjct: 133 IVKPYLELNLTETEVTYILCQIVCNYAGRR--LQGQIQAAGERFLEEISDNLHSYYKNLR 190
Query: 457 EERKQHLNEGAKQMGVLN 510
E+ + + AK M ++N
Sbjct: 191 EKFENYALRLAKMMQIVN 208
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 118 NYFTYTKKHIEAXLTHKSGKHKKLQNKXHKEDFLKHDHH 2
N++ Y+ HI A L S K + K KEDF+ HD H
Sbjct: 100 NFYQYSV-HITAEL---SSKKEVTFTKKGKEDFIVHDRH 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,383
Number of Sequences: 27780
Number of extensions: 266650
Number of successful extensions: 914
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -