Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_O01
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 466 FFPLAILWRAGATLGLHLIEDFPRQLLVVL 377
           F  L + +R    +G HLI+ F    LVV+
Sbjct: 186 FSRLVVFFRFERQIGHHLIQTFAPSTLVVM 215


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 325 YTACKAFKQLLQELGDFAGQREV--VAENLQSNVVRELHLLAKELREERKQHLNEGAKQ 495
           +++ K  +    ELG    ++ +  + E LQ NV+++ HLL    +++    L + A Q
Sbjct: 124 FSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQ 182


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 180 PYAQRNRVFR*IWKLCQGEVRY 245
           P A  ++    IWK C+G++ Y
Sbjct: 188 PLAHYDQTAIEIWKQCEGKIDY 209


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 451  LREERKQHLNEGAKQMGVLNTSIGSL 528
            + EER+QH  EG  +    +T+  +L
Sbjct: 1068 MSEERRQHTAEGVPEQPPHDTTCTTL 1093


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 343 MLYMLYTGIHLLLSFLV 293
           MLY+L+  + L LSF V
Sbjct: 139 MLYLLFATLPLRLSFCV 155


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 153 KLNTPTXLSGSKITSHTPKNTLKLH*HTRV 64
           K+N     SG+KI+  T K+ +K +  T V
Sbjct: 544 KMNETYINSGNKISLATSKSFIKANSQTEV 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,832
Number of Sequences: 438
Number of extensions: 3224
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)