Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N24
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    49   4e-07
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.2  
SPAC1F12.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   9.5  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 170 RFLLEGQIIELI*TIIPAFTLIXIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 349
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 350 F-----NNIEFDSYIIPSNEIKNNEFR 415
           F       + FDSY++P  +++    R
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLR 155


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 417 SRNSLFFISLDGIIYESNSILLKSE 343
           SRN+L+FI LD     SN   + SE
Sbjct: 177 SRNTLYFIELDKKTENSNYFEISSE 201


>SPAC1F12.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 37

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 131 YLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLI 235
           Y II L  N +  ++   G I+E I T+IPA  LI
Sbjct: 2   YDIILLKINTHTVKY---GSIVEFIWTLIPALILI 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,806
Number of Sequences: 5004
Number of extensions: 14500
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)