Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N24
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        77   5e-15
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        77   5e-15
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        77   5e-15

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +2

Query: 125 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIXIAXXXXXXXXXXXXXXXXXITL 304
           V +LII     K   R+L++G ++E+I TIIPA  LI IA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 305 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRL 418
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRL
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRL 145



 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 31  LNLQNGASPLIXQIIFFHDHTLIIL 105
           L+LQ+ A P++ +IIFFHD  + IL
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFIL 39


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +2

Query: 125 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIXIAXXXXXXXXXXXXXXXXXITL 304
           V +LII     K   R+L++G ++E+I TIIPA  LI IA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 305 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRL 418
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRL
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRL 145



 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 31  LNLQNGASPLIXQIIFFHDHTLIIL 105
           L+LQ+ A P++ +IIFFHD  + IL
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFIL 39


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +2

Query: 125 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIXIAXXXXXXXXXXXXXXXXXITL 304
           V +LII     K   R+L++G ++E+I TIIPA  LI IA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 305 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRL 418
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRL
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRL 145



 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 31  LNLQNGASPLIXQIIFFHDHTLIIL 105
           L+LQ+ A P++ +IIFFHD  + IL
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFIL 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,323,689
Number of Sequences: 59808
Number of extensions: 86650
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)